Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13o19
(749 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome re... 334 3e-92
U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical pr... 135 3e-32
U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome regu... 121 5e-28
AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical ... 83 2e-16
AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical ... 83 2e-16
Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical pr... 79 3e-15
AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome re... 75 7e-14
AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome re... 66 2e-11
AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome re... 66 2e-11
Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical pr... 57 2e-08
Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 39 0.003
Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical pr... 38 0.008
D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein. 31 0.66
D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein. 31 0.66
D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein. 31 0.66
D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein. 31 0.66
AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical... 31 0.66
AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical ... 31 0.66
AL132877-2|CAC70113.2| 193|Caenorhabditis elegans Hypothetical ... 31 0.66
AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical ... 31 0.66
U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn (wern... 31 1.2
Z82286-3|CAB05309.1| 781|Caenorhabditis elegans Hypothetical pr... 29 3.5
AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical ... 29 3.5
AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin i... 29 3.5
AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosenso... 29 3.5
AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosenso... 29 3.5
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor... 29 3.5
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor... 29 3.5
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor... 29 3.5
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor... 29 3.5
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical p... 29 4.7
Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical pr... 29 4.7
AF400666-1|AAL28025.1| 481|Caenorhabditis elegans CUX-7 protein. 29 4.7
AF016443-1|AAC24277.1| 366|Caenorhabditis elegans Hypothetical ... 29 4.7
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 29 4.7
AC006605-6|AAK85446.2| 495|Caenorhabditis elegans Clk-2 upstrea... 29 4.7
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 28 6.2
AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to ye... 28 6.2
Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical p... 28 8.1
Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical p... 28 8.1
AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical... 28 8.1
AF040655-9|AAB95038.1| 288|Caenorhabditis elegans Hypothetical ... 28 8.1
AC026301-5|AAK68894.1| 745|Caenorhabditis elegans Hypothetical ... 28 8.1
>AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 2 protein.
Length = 443
Score = 334 bits (822), Expect = 3e-92
Identities = 155/184 (84%), Positives = 173/184 (94%)
Frame = +2
Query: 170 YEPPIPTRVGKKKRKAKGPDAALKLPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQER 349
YE PIP+R+GKKK+ +KGPDAA KLP VTPH RCRLKLLK ERIKDYLLME+EFI+NQER
Sbjct: 28 YEAPIPSRIGKKKKGSKGPDAASKLPAVTPHARCRLKLLKSERIKDYLLMEQEFIQNQER 87
Query: 350 LKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQL 529
LKPQEE+ EEER+KVD+LRGTPM+VG+LEEIIDD HAIVST+VGSEHYV+I+SFVDK+QL
Sbjct: 88 LKPQEERQEEERAKVDELRGTPMAVGSLEEIIDDQHAIVSTNVGSEHYVNIMSFVDKEQL 147
Query: 530 EPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAPQETYADIGGLDTQIQEIKESVELP 709
EPGCSVLLNHK HAV+GVL DDTDPMVSVMKLEKAPQETYAD+GGLD QIQEIKE+VELP
Sbjct: 148 EPGCSVLLNHKNHAVIGVLSDDTDPMVSVMKLEKAPQETYADVGGLDQQIQEIKEAVELP 207
Query: 710 LTHP 721
LTHP
Sbjct: 208 LTHP 211
>U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical
protein C10G11.8 protein.
Length = 438
Score = 135 bits (327), Expect = 3e-32
Identities = 86/193 (44%), Positives = 111/193 (57%), Gaps = 14/193 (7%)
Frame = +2
Query: 185 PTRVGKK---KRKAKGPDAALKLPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQERL- 352
PT K K +G + A KLP V P +C ++LLK+ RI DYL +E+EFI Q
Sbjct: 15 PTHAAMKIAMKSGRRGIENANKLPTVAPKRQCLVRLLKMNRIHDYLQLEKEFITRQTSRH 74
Query: 353 -KPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDN-HAIVSTSVGS--EHYVSILSFVDK 520
+P + E+ V LRGTP ++ + E+ DD HA+V GS E YV ILS VDK
Sbjct: 75 GRPLAVQKRREQQLVQSLRGTPTTLARVHELFDDEKHAVVVVE-GSRREWYVPILSIVDK 133
Query: 521 DQLEPGCSVLLN----HKV--HAVVGVLGDDTDPMVSVMKLEKAPQETYADIGGLDTQIQ 682
D L V++ K A+VGVL D D K+EK P+ET+ DIGG ++QIQ
Sbjct: 134 DLLRLNALVMVKAGGMFKTVPSAIVGVLDDKIDSNAMGHKVEKTPKETFDDIGGCESQIQ 193
Query: 683 EIKESVELPLTHP 721
E+KESVELPLTHP
Sbjct: 194 ELKESVELPLTHP 206
>U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 3 protein.
Length = 414
Score = 121 bits (292), Expect = 5e-28
Identities = 58/148 (39%), Positives = 97/148 (65%)
Frame = +2
Query: 275 LKLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDN 454
+KL LER +L + E++I+ + R E+++ + +V ++ P+ +G E +D N
Sbjct: 38 IKLTTLERQLAHLQVMEDYIKLETR--NLEKELLHAQEEVKRIQSVPLVIGQFLEAVDQN 95
Query: 455 HAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKA 634
HAIV ++ GS +YV +LS +D++ L+PGCSV L+ +A+V VL + D + +++ ++
Sbjct: 96 HAIVGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSNALVDVLPPEADSSIQMLRPDEK 155
Query: 635 PQETYADIGGLDTQIQEIKESVELPLTH 718
P +Y DIGGLD Q QE++E+VELPLTH
Sbjct: 156 PDISYGDIGGLDMQKQEVREAVELPLTH 183
>AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical
protein F56F11.4a protein.
Length = 411
Score = 83.4 bits (197), Expect = 2e-16
Identities = 53/179 (29%), Positives = 90/179 (50%)
Frame = +2
Query: 185 PTRVGKKKRKAKGPDAALKLPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQERLKPQE 364
P V RK DA + P+ + +++ + + + + + + Q+ L +
Sbjct: 3 PAPVFPNSRKPATLDANSDEQTLRPYFKTKVEQAE-QTVAEKSINVRRLMAQQKELNGKV 61
Query: 365 EKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCS 544
++EE S + + +G+ VG + + +D +V ++ V + + VD L G
Sbjct: 62 RLLKEEISHLHE-QGS--HVGEVCKAMDKKKVLVKNHPDGKYIVDVAASVDISTLAAGTR 118
Query: 545 VLLNHKVHAVVGVLGDDTDPMVSVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHP 721
V L +A+ VL DP+VS+M +EK P TY +GGLDTQI+EIKE +ELP+ HP
Sbjct: 119 VALRADNYAIHEVLPSKVDPLVSLMMVEKVPDSTYEMVGGLDTQIKEIKEVIELPVKHP 177
>AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical
protein F56F11.4b protein.
Length = 432
Score = 83.4 bits (197), Expect = 2e-16
Identities = 53/179 (29%), Positives = 90/179 (50%)
Frame = +2
Query: 185 PTRVGKKKRKAKGPDAALKLPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQERLKPQE 364
P V RK DA + P+ + +++ + + + + + + Q+ L +
Sbjct: 24 PAPVFPNSRKPATLDANSDEQTLRPYFKTKVEQAE-QTVAEKSINVRRLMAQQKELNGKV 82
Query: 365 EKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCS 544
++EE S + + +G+ VG + + +D +V ++ V + + VD L G
Sbjct: 83 RLLKEEISHLHE-QGS--HVGEVCKAMDKKKVLVKNHPDGKYIVDVAASVDISTLAAGTR 139
Query: 545 VLLNHKVHAVVGVLGDDTDPMVSVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHP 721
V L +A+ VL DP+VS+M +EK P TY +GGLDTQI+EIKE +ELP+ HP
Sbjct: 140 VALRADNYAIHEVLPSKVDPLVSLMMVEKVPDSTYEMVGGLDTQIKEIKEVIELPVKHP 198
>Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical
protein Y49E10.1 protein.
Length = 416
Score = 79.0 bits (186), Expect = 3e-15
Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 4/133 (3%)
Frame = +2
Query: 335 RNQERLKPQEEKIEEE----RSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSI 502
+N RL+ Q ++ + + ++ L VG + + +D +V ++ V +
Sbjct: 50 QNVRRLQAQRNELNTKVRMLKEELQQLHEQGSYVGEVSKAMDKKKVLVKVHPEGKYVVDV 109
Query: 503 LSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAPQETYADIGGLDTQIQ 682
+D + L G V L +A+ +L + DP+VS+M +EK P TY +GGLD QI+
Sbjct: 110 DKSIDINSLNTGARVALRADSYALHKLLPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 169
Query: 683 EIKESVELPLTHP 721
EIKE +ELP+ HP
Sbjct: 170 EIKEVIELPVKHP 182
>AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 5 protein.
Length = 430
Score = 74.5 bits (175), Expect = 7e-14
Identities = 46/153 (30%), Positives = 79/153 (51%), Gaps = 18/153 (11%)
Frame = +2
Query: 314 LMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIID--DNH---------- 457
+M E R +E+I+E ++ + P V N+ E++D DN
Sbjct: 47 IMRSEVQRINHSATTLKERIKENTERIKVNKTLPYLVSNVVELLDLEDNTEEEGANVDLD 106
Query: 458 ------AIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVM 619
A++ TS + +++ ++ VD D+L+PG V +N + ++ L + D V M
Sbjct: 107 AQKTKCAVIKTSTRATYFLPVVGLVDPDELKPGDLVGVNKDSYLILEKLPAEYDSRVKAM 166
Query: 620 KLEKAPQETYADIGGLDTQIQEIKESVELPLTH 718
++++ P E Y+DIGG D QIQE+ E+V LP+TH
Sbjct: 167 EVDERPTEQYSDIGGCDKQIQELIEAVVLPMTH 199
>AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform b
protein.
Length = 398
Score = 66.5 bits (155), Expect = 2e-11
Identities = 41/152 (26%), Positives = 75/152 (49%)
Frame = +2
Query: 287 KLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIV 466
KL +D ++ + + + Q +K E + + L+ VG + + + + IV
Sbjct: 24 KLAECRDIEQKLKDLRKKESEMTKQFDKSEND---IKSLQSVGQIVGEVLKQLSEEKFIV 80
Query: 467 STSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAPQET 646
+ G + V ++K++L+ G V L+ ++ L + DP+V M E +
Sbjct: 81 KATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNIS 140
Query: 647 YADIGGLDTQIQEIKESVELPLTHPGIL*RNG 742
Y+D+GGL QI+E++E VELPL +P + R G
Sbjct: 141 YSDVGGLAEQIRELREVVELPLINPELFKRVG 172
>AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform a
protein.
Length = 406
Score = 66.5 bits (155), Expect = 2e-11
Identities = 41/152 (26%), Positives = 75/152 (49%)
Frame = +2
Query: 287 KLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIV 466
KL +D ++ + + + Q +K E + + L+ VG + + + + IV
Sbjct: 32 KLAECRDIEQKLKDLRKKESEMTKQFDKSEND---IKSLQSVGQIVGEVLKQLSEEKFIV 88
Query: 467 STSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAPQET 646
+ G + V ++K++L+ G V L+ ++ L + DP+V M E +
Sbjct: 89 KATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNIS 148
Query: 647 YADIGGLDTQIQEIKESVELPLTHPGIL*RNG 742
Y+D+GGL QI+E++E VELPL +P + R G
Sbjct: 149 YSDVGGLAEQIRELREVVELPLINPELFKRVG 180
>Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical
protein C52E4.4 protein.
Length = 435
Score = 56.8 bits (131), Expect = 2e-08
Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Frame = +2
Query: 413 PMSVGNLEEII-DDNHA---IVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVG 580
P+ V +II D H +++ ++ V + V +E G V ++ + +
Sbjct: 94 PLQVARCTKIITSDKHDPRYLINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHL 153
Query: 581 VLGDDTDPMVSVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHP 721
L DP V++M++E+ P TY+D+GG QI++++E VE PL HP
Sbjct: 154 PLPAKIDPTVTMMQVEEKPDVTYSDVGGCKDQIEKLREVVETPLLHP 200
>Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +2
Query: 581 VLGDDTDPMVSVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHP 721
V+ + DP+ + E + Y D+GG+ Q+ +IKE VELPL HP
Sbjct: 186 VIHYEGDPIKREEEEEALNEVGYDDLGGVRKQLAQIKEMVELPLRHP 232
Score = 34.3 bits (75), Expect = 0.094
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 629 KAPQETYADIGGLDTQIQEIKESVELPLTHP 721
+ P T++DIGGL +E++E V+ P+ HP
Sbjct: 475 ETPNTTWSDIGGLQNVKRELQELVQYPVEHP 505
>Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +2
Query: 581 VLGDDTDPMVSVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHP 721
V+ + DP+ + E + Y D+GG+ Q+ +IKE VELPL HP
Sbjct: 186 VIHYEGDPIKREEEEEALNEVGYDDLGGVRKQLAQIKEMVELPLRHP 232
Score = 34.3 bits (75), Expect = 0.094
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 629 KAPQETYADIGGLDTQIQEIKESVELPLTHP 721
+ P T++DIGGL +E++E V+ P+ HP
Sbjct: 475 ETPNTTWSDIGGLQNVKRELQELVQYPVEHP 505
>Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical
protein C06A1.1 protein.
Length = 809
Score = 37.9 bits (84), Expect = 0.008
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +2
Query: 599 DPMVSVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHP 721
DP+ + E Y D+GG+ Q+ +IKE VELPL HP
Sbjct: 193 DPIKREEEEESMNDIGYDDLGGVRKQLAQIKEMVELPLRHP 233
Score = 34.3 bits (75), Expect = 0.094
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 629 KAPQETYADIGGLDTQIQEIKESVELPLTHP 721
+ P T++DIGGL +E++E V+ P+ HP
Sbjct: 476 ETPNTTWSDIGGLQNVKRELQELVQYPVEHP 506
>D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 31.5 bits (68), Expect = 0.66
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 314 LMEEEFIRNQERLKPQEEKIEEERSKVDD 400
L+EEE R +ERLK EK+EE VD+
Sbjct: 94 LLEEELERAEERLKIATEKLEEATHNVDE 122
>D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 31.5 bits (68), Expect = 0.66
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 314 LMEEEFIRNQERLKPQEEKIEEERSKVDD 400
L+EEE R +ERLK EK+EE VD+
Sbjct: 94 LLEEELERAEERLKIATEKLEEATHNVDE 122
>D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 31.5 bits (68), Expect = 0.66
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 314 LMEEEFIRNQERLKPQEEKIEEERSKVDD 400
L+EEE R +ERLK EK+EE VD+
Sbjct: 94 LLEEELERAEERLKIATEKLEEATHNVDE 122
>D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 31.5 bits (68), Expect = 0.66
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 314 LMEEEFIRNQERLKPQEEKIEEERSKVDD 400
L+EEE R +ERLK EK+EE VD+
Sbjct: 94 LLEEELERAEERLKIATEKLEEATHNVDE 122
>AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical
protein Y39B6A.30 protein.
Length = 1408
Score = 31.5 bits (68), Expect = 0.66
Identities = 20/66 (30%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +2
Query: 200 KKKRKAKGPDAALKLPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQE-RLKPQEEKIE 376
+++ K K +A + ++ P R R++ +K E ++ + E E ++ +E RLK +EEK++
Sbjct: 882 RREEKCKEKEAEEENEKLIPE-RKRMEAIKEE--EERVKAEREKVKKEEERLKAEEEKVK 938
Query: 377 EERSKV 394
E+ KV
Sbjct: 939 VEKEKV 944
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +2
Query: 191 RVGKKKRKAKGPDAALKLPQVTPHTRCRLKLLKLERIKDYLLMEEEFIR-NQERLKPQEE 367
RV ++ K K + LK + + E++K +E ++ +ERLK +EE
Sbjct: 915 RVKAEREKVKKEEERLKAEEEKVKVEKEKVKAEEEKVKVEKERNKEKVKAEEERLKAEEE 974
Query: 368 KIEEERSKV 394
K++ E+ KV
Sbjct: 975 KVKIEKEKV 983
>AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1d protein.
Length = 284
Score = 31.5 bits (68), Expect = 0.66
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 314 LMEEEFIRNQERLKPQEEKIEEERSKVDD 400
L+EEE R +ERLK EK+EE VD+
Sbjct: 94 LLEEELERAEERLKIATEKLEEATHNVDE 122
>AL132877-2|CAC70113.2| 193|Caenorhabditis elegans Hypothetical
protein Y105E8B.1b protein.
Length = 193
Score = 31.5 bits (68), Expect = 0.66
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 314 LMEEEFIRNQERLKPQEEKIEEERSKVDD 400
L+EEE R +ERLK EK+EE VD+
Sbjct: 3 LLEEELERAEERLKIATEKLEEATHNVDE 31
>AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1a protein.
Length = 284
Score = 31.5 bits (68), Expect = 0.66
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 314 LMEEEFIRNQERLKPQEEKIEEERSKVDD 400
L+EEE R +ERLK EK+EE VD+
Sbjct: 94 LLEEELERAEERLKIATEKLEEATHNVDE 122
>U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn
(werner's syndrome) relatedprotein 1 protein.
Length = 1056
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Frame = +2
Query: 197 GKKKRKAKGPDAALKLPQVTPH-TRCRLKLLKLERIKDYL-LMEEEFIRN--QERLKPQE 364
GKK++ A Q T T K+L +I++Y E E + N ++ +
Sbjct: 747 GKKEKAAPSTVPGASRSQSTKSSTEIPTKILGANKIREYEPANENEQLMNLKKQEVTGLP 806
Query: 365 EKIEEERSKVDDLRGTPMSVGNLEEI 442
EKI++ RS++DD+R + + N+ E+
Sbjct: 807 EKIDQLRSRLDDIR---VGIANMHEV 829
>Z82286-3|CAB05309.1| 781|Caenorhabditis elegans Hypothetical
protein W02A2.6 protein.
Length = 781
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 278 KLLKLERIKDY-LLMEEEFIRNQERLKPQEEKIEEERSK 391
KL +L + K + LLM E F RNQE L+ +E+K RSK
Sbjct: 89 KLKELMKKKSFILLMAERFDRNQE-LQRKEDKFARLRSK 126
>AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical
protein Y105E8B.1c protein.
Length = 256
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +2
Query: 311 LLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDD 451
+L+EE+ R ++RLK K+E+ D+ + ++ N ++ DD
Sbjct: 65 VLVEEDLERTEDRLKTATSKLEQATKAADEADRSRRALSNQIDMDDD 111
>AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin
isoform IV protein.
Length = 256
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +2
Query: 311 LLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDD 451
+L+EE+ R ++RLK K+E+ D+ + ++ N ++ DD
Sbjct: 65 VLVEEDLERTEDRLKTATSKLEQATKAADEADRSRRALSNQIDMDDD 111
>AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform g protein.
Length = 1604
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 679 PGNQGICGVASNTSXNTMKKW 741
PG++GICG N+S N +K+W
Sbjct: 1275 PGDRGICG--KNSSTNPLKRW 1293
>AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform f protein.
Length = 1818
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 679 PGNQGICGVASNTSXNTMKKW 741
PG++GICG N+S N +K+W
Sbjct: 1489 PGDRGICG--KNSSTNPLKRW 1507
>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform e protein.
Length = 1954
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 679 PGNQGICGVASNTSXNTMKKW 741
PG++GICG N+S N +K+W
Sbjct: 1625 PGDRGICG--KNSSTNPLKRW 1643
>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform d protein.
Length = 1995
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 679 PGNQGICGVASNTSXNTMKKW 741
PG++GICG N+S N +K+W
Sbjct: 1666 PGDRGICG--KNSSTNPLKRW 1684
>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform h protein.
Length = 2006
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 679 PGNQGICGVASNTSXNTMKKW 741
PG++GICG N+S N +K+W
Sbjct: 1677 PGDRGICG--KNSSTNPLKRW 1695
>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform a protein.
Length = 2007
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 679 PGNQGICGVASNTSXNTMKKW 741
PG++GICG N+S N +K+W
Sbjct: 1678 PGDRGICG--KNSSTNPLKRW 1696
>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
T28C6.9 protein.
Length = 1861
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 239 KLPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQERLKPQ-EEKIEEERSKVDDLR 406
KL Q+ R++ L+ ++ + M E+ + E +K Q E+K+ E R ++DDL+
Sbjct: 1447 KLTQLRNELTARIEQLESQKSNEQAQMSEK-LSQVESMKVQIEQKLYETREELDDLK 1502
>Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +2
Query: 287 KLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDD 451
KL+ K+ L E+ R Q+ K + ++ S +DD + LEE++D+
Sbjct: 207 KLDAEKEKALAEKRLEREQKLYKDLKSSSDDTSSSIDDKMNFDDEIEYLEEMLDN 261
>Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +2
Query: 287 KLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDD 451
KL+ K+ L E+ R Q+ K + ++ S +DD + LEE++D+
Sbjct: 207 KLDAEKEKALAEKRLEREQKLYKDLKSSSDDTSSSIDDKMNFDDEIEYLEEMLDN 261
>AF400666-1|AAL28025.1| 481|Caenorhabditis elegans CUX-7 protein.
Length = 481
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 314 LMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPM 418
L E+ R + R + +EEK+++E SK+ +L P+
Sbjct: 364 LFEKIEAREERRKRKEEEKLKDELSKIKELEEQPV 398
>AF016443-1|AAC24277.1| 366|Caenorhabditis elegans Hypothetical
protein C17E7.5 protein.
Length = 366
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +2
Query: 224 PDAALKLPQVTPHTRCRLKLLKLERIKDYLLMEEEF 331
PDA L+L Q++P R++ L + ++ + + +EEF
Sbjct: 240 PDAILRLKQISPQFLQRIRSLLVMKLIELKITDEEF 275
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +2
Query: 362 EEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQ-LEPG 538
EE +E E +DD+ + GNLE D + S+ +E ++ +V++ + L G
Sbjct: 2739 EETVETEEMIMDDMMDLYYTPGNLEIARDTFDKLEIASIMNEILYTVDQYVEETEILFRG 2798
Query: 539 CSVLLNHKVHAVVGV 583
S + + AV+ +
Sbjct: 2799 ASTAADRQAFAVMSI 2813
>AC006605-6|AAK85446.2| 495|Caenorhabditis elegans Clk-2 upstream,
human gene xe7related protein 7 protein.
Length = 495
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 314 LMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPM 418
L E+ R + R + +EEK+++E SK+ +L P+
Sbjct: 364 LFEKIEAREERRKRKEEEKLKDELSKIKELEEQPV 398
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 287 KLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDL 403
K E K+ + +EE + E K +EEK EEE K D++
Sbjct: 323 KEEEQKEEVEKKEEEEKKDEEPKKEEEKKEEEEKKEDEV 361
>AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 4 protein.
Length = 430
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 599 DPMVSVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHP 721
D + + +EK P + DI GL+ + +KE+V LP+ P
Sbjct: 102 DKLSGAIVMEK-PNVKWTDIAGLEGAKEALKEAVILPIKFP 141
>Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical
protein T07C4.10 protein.
Length = 1013
Score = 27.9 bits (59), Expect = 8.1
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 7/152 (4%)
Frame = +2
Query: 272 RLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDD 451
R K LKL+ KD + +E L+ + EK+ E+ + ++ LE+I +
Sbjct: 367 RQKELKLQLEKDMEDLRKEHEGQMAELEKRLEKVSEKEKE---------AIEQLEKIQKE 417
Query: 452 NHAIVSTSV--GSEHYVSILSFVD-KDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMK 622
N IV +V V + S ++ K++L+ +V L + H V G+ + +S K
Sbjct: 418 NKTIVKENVYLSESKQVLLESEINLKNELDE-MAVKLRNSQHQVAGL-----NEKISEEK 471
Query: 623 LEKAPQETYADIGGLDTQ----IQEIKESVEL 706
+ Q+ AD+ LD Q ++E ++S EL
Sbjct: 472 RRRKKQD--ADVTRLDEQNQKLLREAQDSAEL 501
>Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical
protein T07C4.10 protein.
Length = 1013
Score = 27.9 bits (59), Expect = 8.1
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 7/152 (4%)
Frame = +2
Query: 272 RLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDD 451
R K LKL+ KD + +E L+ + EK+ E+ + ++ LE+I +
Sbjct: 367 RQKELKLQLEKDMEDLRKEHEGQMAELEKRLEKVSEKEKE---------AIEQLEKIQKE 417
Query: 452 NHAIVSTSV--GSEHYVSILSFVD-KDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMK 622
N IV +V V + S ++ K++L+ +V L + H V G+ + +S K
Sbjct: 418 NKTIVKENVYLSESKQVLLESEINLKNELDE-MAVKLRNSQHQVAGL-----NEKISEEK 471
Query: 623 LEKAPQETYADIGGLDTQ----IQEIKESVEL 706
+ Q+ AD+ LD Q ++E ++S EL
Sbjct: 472 RRRKKQD--ADVTRLDEQNQKLLREAQDSAEL 501
>AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical
protein Y39B6A.18 protein.
Length = 1352
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 5/48 (10%)
Frame = +2
Query: 266 RCRLKLLKLERIKDYLLMEEEFI-----RNQERLKPQEEKIEEERSKV 394
R + + K+++ ++ L EEE + RN+E++K +EE+++ E KV
Sbjct: 890 RVKAEREKVKKEEERLKAEEEKVKVEKERNKEKVKAEEERLKAEEEKV 937
>AF040655-9|AAB95038.1| 288|Caenorhabditis elegans Hypothetical
protein T24E12.3 protein.
Length = 288
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 323 EEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDD 451
++F+ NQE+L +EKI+ ++ + D + S G+ E + D
Sbjct: 236 QKFLNNQEKLNEDQEKIKNDKER-DSISQVENSDGSSESGLAD 277
>AC026301-5|AAK68894.1| 745|Caenorhabditis elegans Hypothetical
protein Y54F10BM.3 protein.
Length = 745
Score = 27.9 bits (59), Expect = 8.1
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +2
Query: 203 KKRKAKGPDAALKLPQVTPHTRCRLKLLKLERIKDYLL-MEEEFIRNQERL-KPQEEKIE 376
K R A G D A K P+ + +K + L+R LL ME+ ++N+E+ KPQ E E
Sbjct: 241 KNRNAGGVDPA-KRPRESAKWLKHVKEVTLKRGGVELLPMEDVIVKNKEKFKKPQNELRE 299
Query: 377 EE 382
E
Sbjct: 300 NE 301
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,829,697
Number of Sequences: 27780
Number of extensions: 304833
Number of successful extensions: 1180
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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