Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13o12
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.91 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   6.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   6.4  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 205 PKYVTLLDPGAYQISDTDTKKWN 273
           PK+   +D   Y  +D DTKKWN
Sbjct: 365 PKFPRNIDE--YNNNDLDTKKWN 385


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +2

Query: 101 IEFLHSV*IFNFLGCHLDYFFHKWPSTWKAGFLRPQN 211
           ++FL+ +      G  +D   H WPS  +  + R +N
Sbjct: 190 VDFLNDLVAIGVAGFRVDAAKHMWPSDLRTIYSRVRN 226


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +1

Query: 328 WTHAIYNPEYRKKI-PNCPSMMSRQP 402
           W +AI +P YR+++   C  M   +P
Sbjct: 334 WIYAINHPRYRQELQKRCKWMGIHEP 359


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +1

Query: 19  IDVDLHYLRLFIFYILEYYV 78
           + VDL + R F +Y+++ Y+
Sbjct: 231 LKVDLLFKREFSYYLIQIYI 250


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +1

Query: 19  IDVDLHYLRLFIFYILEYYV 78
           + VDL + R F +Y+++ Y+
Sbjct: 231 LKVDLLFKREFSYYLIQIYI 250


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +1

Query: 328 WTHAIYNPEYRKKI-PNCPSMMSRQP 402
           W +AI +P YR+++   C  M   +P
Sbjct: 334 WIYAINHPRYRQELQKRCKWMGIHEP 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,961
Number of Sequences: 438
Number of extensions: 4254
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)