Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13o07
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 31 0.11
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 31 0.11
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 31 0.11
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 31 0.11
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 31 0.11
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 31 0.11
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 31 0.20
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 31 0.20
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 31 0.20
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 31 0.20
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 30 0.35
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 27 1.9
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 26 5.7
SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit L13... 26 5.7
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 26 5.7
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 26 5.7
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 25 9.9
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 25 9.9
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 25 9.9
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p... 25 9.9
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 25 9.9
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar... 25 9.9
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 31.5 bits (68), Expect = 0.11
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = +3
Query: 387 NIQEVNGKRGMNWQIPYSLLPPREDYDQNKKRCVIYDVVFHPNTLRMAEVNKQFRELVNN 566
N+ + + + + W +PYSL +E + IYD + T + +K+F+ N
Sbjct: 151 NVDDFHTRLFILWMLPYSLRKLKERNYWKSEISEIYDFLEDKRTASYGKTHKRFQPQNKN 210
Query: 567 TAFEGLQKTYN 599
E L K N
Sbjct: 211 LGKESLSKKNN 221
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 31.5 bits (68), Expect = 0.11
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = +3
Query: 387 NIQEVNGKRGMNWQIPYSLLPPREDYDQNKKRCVIYDVVFHPNTLRMAEVNKQFRELVNN 566
N+ + + + + W +PYSL +E + IYD + T + +K+F+ N
Sbjct: 151 NVDDFHTRLFILWMLPYSLRKLKERNYWKSEISEIYDFLEDKRTASYGKTHKRFQPQNKN 210
Query: 567 TAFEGLQKTYN 599
E L K N
Sbjct: 211 LGKESLSKKNN 221
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 31.5 bits (68), Expect = 0.11
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = +3
Query: 387 NIQEVNGKRGMNWQIPYSLLPPREDYDQNKKRCVIYDVVFHPNTLRMAEVNKQFRELVNN 566
N+ + + + + W +PYSL +E + IYD + T + +K+F+ N
Sbjct: 151 NVDDFHTRLFILWMLPYSLRKLKERNYWKSEISEIYDFLEDKRTASYGKTHKRFQPQNKN 210
Query: 567 TAFEGLQKTYN 599
E L K N
Sbjct: 211 LGKESLSKKNN 221
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 31.5 bits (68), Expect = 0.11
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = +3
Query: 387 NIQEVNGKRGMNWQIPYSLLPPREDYDQNKKRCVIYDVVFHPNTLRMAEVNKQFRELVNN 566
N+ + + + + W +PYSL +E + IYD + T + +K+F+ N
Sbjct: 151 NVDDFHTRLFILWMLPYSLRKLKERNYWKSEISEIYDFLEDKRTASYGKTHKRFQPQNKN 210
Query: 567 TAFEGLQKTYN 599
E L K N
Sbjct: 211 LGKESLSKKNN 221
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 31.5 bits (68), Expect = 0.11
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = +3
Query: 387 NIQEVNGKRGMNWQIPYSLLPPREDYDQNKKRCVIYDVVFHPNTLRMAEVNKQFRELVNN 566
N+ + + + + W +PYSL +E + IYD + T + +K+F+ N
Sbjct: 151 NVDDFHTRLFILWMLPYSLRKLKERNYWKSEISEIYDFLEDKRTASYGKTHKRFQPQNKN 210
Query: 567 TAFEGLQKTYN 599
E L K N
Sbjct: 211 LGKESLSKKNN 221
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 31.5 bits (68), Expect = 0.11
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = +3
Query: 387 NIQEVNGKRGMNWQIPYSLLPPREDYDQNKKRCVIYDVVFHPNTLRMAEVNKQFRELVNN 566
N+ + + + + W +PYSL +E + IYD + T + +K+F+ N
Sbjct: 151 NVDDFHTRLFILWMLPYSLRKLKERNYWKSEISEIYDFLEDKRTASYGKTHKRFQPQNKN 210
Query: 567 TAFEGLQKTYN 599
E L K N
Sbjct: 211 LGKESLSKKNN 221
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 30.7 bits (66), Expect = 0.20
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = +3
Query: 387 NIQEVNGKRGMNWQIPYSLLPPREDYDQNKKRCVIYDVVFHPNTLRMAEVNKQFRELVNN 566
N+ + + + + W +PYSL +E + IYD + T + +K+F+ N
Sbjct: 151 NVDDFHTRLFILWMLPYSLRKLKERNYWKSEISEIYDFLEDKRTASYGKTHKRFQLQNKN 210
Query: 567 TAFEGLQKTYN 599
E L K N
Sbjct: 211 LGKESLSKKNN 221
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 30.7 bits (66), Expect = 0.20
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = +3
Query: 387 NIQEVNGKRGMNWQIPYSLLPPREDYDQNKKRCVIYDVVFHPNTLRMAEVNKQFRELVNN 566
N+ + + + + W +PYSL +E + IYD + T + +K+F+ N
Sbjct: 151 NVDDFHTRLFILWMLPYSLRKLKERNYWKSEISEIYDFLEDKRTASYGKTHKRFQLQNKN 210
Query: 567 TAFEGLQKTYN 599
E L K N
Sbjct: 211 LGKESLSKKNN 221
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 30.7 bits (66), Expect = 0.20
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = +3
Query: 387 NIQEVNGKRGMNWQIPYSLLPPREDYDQNKKRCVIYDVVFHPNTLRMAEVNKQFRELVNN 566
N+ + + + + W +PYSL +E + IYD + T + +K+F+ N
Sbjct: 151 NVDDFHTRLFILWMLPYSLRKLKERNYWKSEISEIYDFLEDKRTASYGKTHKRFQLQNKN 210
Query: 567 TAFEGLQKTYN 599
E L K N
Sbjct: 211 LGKESLSKKNN 221
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 30.7 bits (66), Expect = 0.20
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = +3
Query: 387 NIQEVNGKRGMNWQIPYSLLPPREDYDQNKKRCVIYDVVFHPNTLRMAEVNKQFRELVNN 566
N+ + + + + W +PYSL +E + IYD + T + +K+F+ N
Sbjct: 151 NVDDFHTRLFILWMLPYSLRKLKERNYWKSEISEIYDFLEDKRTASYGKTHKRFQLQNKN 210
Query: 567 TAFEGLQKTYN 599
E L K N
Sbjct: 211 LGKESLSKKNN 221
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 29.9 bits (64), Expect = 0.35
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = +3
Query: 387 NIQEVNGKRGMNWQIPYSLLPPREDYDQNKKRCVIYDVVFHPNTLRMAEVNKQFRELVNN 566
N+ + + + + W +PYSL +E + IYD + T + +K+F+ N
Sbjct: 151 NVDDFHTRLFILWMLPYSLRKLKERNYWKSEISEIYDFLEDKRTASYGKTHKRFQPQNKN 210
Query: 567 TAFEGLQKTYN 599
E L K N
Sbjct: 211 LGKEFLPKKNN 221
>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 588
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -2
Query: 392 NVVRRFADVIITTNINKSFSVAGH--TCFDNITSLWIYECYIVSTFLLELCHFFLVKSL 222
N + R ++ T N N ++ + CF + +L +Y ++ + L ++ + KSL
Sbjct: 130 NFLWRLVKLVFTKNTNDELAIKNNYRLCFSLLFALLVYGTGVIYVLTIALINYLISKSL 188
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.8 bits (54), Expect = 5.7
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 435 YSLLPPR-EDYD-QNKKRCVIYDVVFHPNTLRMAEVNKQFRELVNNTAFEGLQKTYN 599
++L+PP E Y+ +N+K+ ++ + T R EVN Q E +N + EG+ N
Sbjct: 2187 FALVPPALEKYNLENQKKEILENESKEEET-RQPEVNIQPEEPINTSDMEGVTTEAN 2242
>SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit
L13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 5.7
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Frame = +3
Query: 372 GKPSH----NIQEVNGKRGMNWQIPYS---LLPPREDYDQNKKRCVIYDVVFHP 512
G+P H ++E+ KRG + + +LP + +D+ KR IYD HP
Sbjct: 80 GQPGHLKEWTMEEMAAKRGHKDLLRRAVGGMLPRNKLWDRRMKRLYIYDGAEHP 133
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 25.8 bits (54), Expect = 5.7
Identities = 24/82 (29%), Positives = 37/82 (45%)
Frame = +3
Query: 210 DPANQALYQKEMTQFEKERGYDVTFINPKGGYVIKTSVAGDRKAFINICSNDNIGKPSHN 389
+PAN+ + Q M F D INP G I+T D+ N SN N+ P
Sbjct: 399 NPANKNIIQTPM--FGSSNTIDGP-INPIGASSIQT--LDDQVEMSN--SNQNLAFPPEM 451
Query: 390 IQEVNGKRGMNWQIPYSLLPPR 455
IQ+ + + ++P + PP+
Sbjct: 452 IQQFEAQDFIPGKVPTTAPPPQ 473
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 549 RELVNNTAFEGLQKTYNIHLDVNNFRLPKSSYKGMAVPAVI 671
R+++ TAF GL LD N F L S + A+ I
Sbjct: 766 RQILGQTAFAGLMTVVLAMLDANTFVLDTSHWLLYAITLAI 806
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -3
Query: 172 NFLFFNASCIASRSDLENCVSSSRGFTP 89
N L N SC+ SD E SSR TP
Sbjct: 128 NILSLNDSCLIKLSDDEASNKSSRSSTP 155
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 282 FINPKGGYVIKTSVAGDRKAF 344
F++P G Y+ T+ AGD F
Sbjct: 101 FLDPSGHYIFVTTTAGDNCLF 121
>SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1163
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +3
Query: 408 KRGMNWQIPYSLLPPREDYDQNKKRCVIYDVVFHP 512
+RG+N ++ +S R+DYD+ + + +V P
Sbjct: 1114 RRGLNNRVKFSNKRVRDDYDEEMEEVEVPEVTRKP 1148
>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 252
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 266 TFLLELCHFFLVKSLVRRVTYFF 198
T + L H F+VK LV +TYF+
Sbjct: 106 TKIYPLPHCFIVKDLVPDLTYFY 128
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 559 LIIQHLRGYKKLIIFI 606
L+ H+R YKK+IIF+
Sbjct: 404 LLRSHVRSYKKIIIFL 419
>SPBC19C7.08c |||leucine carboxyl
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 681
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +2
Query: 233 PERNDTIREGTWIRCNIHKSKGRLCYQNKCGRRQ 334
P R+ ++ G W RC + +NK G+R+
Sbjct: 53 PRRSPSVNRGYWTRCMAIRFAVYQFLKNKTGKRK 86
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,021,027
Number of Sequences: 5004
Number of extensions: 66199
Number of successful extensions: 226
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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