Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13o07
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0464 + 34126930-34127065,34127149-34127333,34127444-341276...    32   0.48 
01_05_0610 - 23636097-23638958                                         31   0.84 
06_03_0618 + 22798419-22798588,22798672-22798771,22798891-227989...    29   2.6  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    29   4.5  
12_02_1157 + 26565040-26565081,26565189-26565262,26565343-265654...    28   7.8  
10_08_0755 - 20329127-20329189,20329276-20329389,20329465-203296...    28   7.8  
03_01_0159 + 1298002-1298070,1298181-1298264,1300354-1300506,130...    28   7.8  

>03_06_0464 +
           34126930-34127065,34127149-34127333,34127444-34127632,
           34128309-34128471,34129046-34129232,34129467-34129611
          Length = 334

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +3

Query: 189 EYCEE--VRDPANQALYQKEMTQFEKERGYDVTFINP 293
           +YCE+  V  PA++ L +K   +F +E G DV  +NP
Sbjct: 164 DYCEKNGVWYPASKTLAEKAAWKFAEENGLDVVVVNP 200


>01_05_0610 - 23636097-23638958
          Length = 953

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 224  LVRRVTYFFTVLGEKLSKFLIFQCVLYSF*IRSRKLC-VFITRFYSRCHCDYAVTC 60
            LV    +F  ++G  +   L+F  +L+S   R R  C VF+   Y R +   AVTC
Sbjct: 893  LVNMSFHFSMIIGFMVGLLLVFYFMLFSR--RWRNTCFVFVDGLYDRTYVQVAVTC 946


>06_03_0618 +
           22798419-22798588,22798672-22798771,22798891-22798971,
           22799131-22799180,22799302-22799452,22800027-22800083,
           22800171-22800292,22800397-22800601
          Length = 311

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +3

Query: 72  VITMATG---VKPRDEDTQFSRSDLEAIQDALKNKKFRELLTEYCEE 203
           VIT+++G    +P ++D QF  ++ +  Q   +NK+ +  LTE   E
Sbjct: 166 VITVSSGGMYTEPLNKDLQFGENNFDGTQQYARNKRVQVALTERWSE 212


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +3

Query: 135 LEAIQDALKNKKFRELLTEYCEEVRDPANQAL--YQKEMTQFEKERG 269
           L A+     N  F  +  EY E  RDP  QA    QK +T +E + G
Sbjct: 185 LTALDCGFDNPVFAAIELEYAESDRDPTGQAAEQAQKHLTFYELDLG 231


>12_02_1157 +
           26565040-26565081,26565189-26565262,26565343-26565460,
           26565547-26565617,26565704-26565869,26565946-26566145,
           26566669-26566880,26567404-26567522,26567952-26568053,
           26568144-26568253,26568340-26568427,26568574-26568606,
           26568635-26568834,26568916-26569120
          Length = 579

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 312 KTSVAGD-RKAFINICSNDNIGKPSHNIQEVNGKRGMNWQIPYSLLP 449
           ++S+ G   +++ + C N    +P  N + +  K   +W  P SLLP
Sbjct: 234 RSSIVGPIAQSYHHGCQNSGCSRPERNKEFLFSKALQSWVYPQSLLP 280


>10_08_0755 -
           20329127-20329189,20329276-20329389,20329465-20329617,
           20331790-20332035
          Length = 191

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = +3

Query: 399 VNGKRGMNWQIPYSLLPPR--EDYDQNKKRCVIYDVVFHPN 515
           + GK+G +W+  Y  L     EDY     +C      FHPN
Sbjct: 77  IPGKQGTDWEGGYYPLTLHFSEDYPSKPPKCKFPQGFFHPN 117


>03_01_0159 +
           1298002-1298070,1298181-1298264,1300354-1300506,
           1300589-1300702,1300814-1300876
          Length = 160

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = +3

Query: 399 VNGKRGMNWQIPYSLLPPR--EDYDQNKKRCVIYDVVFHPN 515
           + GK+G +W+  Y  L     EDY     +C      FHPN
Sbjct: 46  IPGKQGTDWEGGYFPLTLHFSEDYPSKPPKCKFPQGFFHPN 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,434,131
Number of Sequences: 37544
Number of extensions: 383100
Number of successful extensions: 910
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)