Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13n23
(722 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC105006-1|AAI05007.1| 312|Homo sapiens PRP38 pre-mRNA processi... 324 2e-88
BC105004-1|AAI05005.1| 312|Homo sapiens PRP38 pre-mRNA processi... 324 2e-88
AL513218-9|CAI12289.1| 312|Homo sapiens PRP38 pre-mRNA processi... 324 2e-88
AK092038-1|BAC03796.1| 312|Homo sapiens protein ( Homo sapiens ... 324 2e-88
AK027842-1|BAB55405.1| 236|Homo sapiens protein ( Homo sapiens ... 183 7e-46
BC132963-1|AAI32964.1| 546|Homo sapiens PRP38 pre-mRNA processi... 43 0.001
BC130346-1|AAI30347.1| 546|Homo sapiens PRP38 pre-mRNA processi... 43 0.001
BC107801-1|AAI07802.1| 383|Homo sapiens PRPF38B protein protein. 43 0.001
BC040127-1|AAH40127.1| 303|Homo sapiens PRPF38B protein protein. 43 0.001
BC024275-1|AAH24275.1| 465|Homo sapiens Unknown (protein for IM... 43 0.001
BC016296-1|AAH16296.1| 474|Homo sapiens Unknown (protein for IM... 43 0.001
BC007757-1|AAH07757.1| 465|Homo sapiens PRPF38B protein protein. 43 0.001
AL591719-6|CAH72070.1| 435|Homo sapiens PRP38 pre-mRNA processi... 43 0.001
AL591719-5|CAH72069.1| 546|Homo sapiens PRP38 pre-mRNA processi... 43 0.001
AL160171-7|CAI12934.1| 435|Homo sapiens PRP38 pre-mRNA processi... 43 0.001
AL160171-6|CAI12933.1| 546|Homo sapiens PRP38 pre-mRNA processi... 43 0.001
AK001192-1|BAA91546.1| 546|Homo sapiens protein ( Homo sapiens ... 43 0.001
BC053838-1|AAH53838.1| 190|Homo sapiens PRPF38B protein protein. 41 0.005
AL591719-4|CAH72068.1| 190|Homo sapiens PRP38 pre-mRNA processi... 41 0.005
AL160171-5|CAI12932.1| 190|Homo sapiens PRP38 pre-mRNA processi... 41 0.005
>BC105006-1|AAI05007.1| 312|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing A, isoform 2
protein.
Length = 312
Score = 324 bits (796), Expect = 2e-88
Identities = 143/184 (77%), Positives = 170/184 (92%)
Frame = +2
Query: 20 MANRTVKDAKSIRGTNPQYLIEKIIRSRIYDSKYWKEECFALTAELVVDKAMELRYVGGV 199
MANRTVKDA SI GTNPQYL+EKIIR+RIY+SKYWKEECF LTAELVVDKAMELR+VGGV
Sbjct: 1 MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 60
Query: 200 HGGFIYPTPFLCLVLKMLQIQPEKDIVVEFIKNEEFKYVRALGAFYMRLTGTSVDCYKYL 379
+GG I PTPFLCL LKMLQIQPEKDI+VEFIKNE+FKYVR LGA YMRLTGT++DCYKYL
Sbjct: 61 YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120
Query: 380 EPLYNDNRKLRRQNRDGQYEIVHMDEFIDELLREERLCDIIMPRIQKRHILEQNNEIEPK 559
EPLYND RK++ QNR+G++E++H+DEFIDELL ER+CDII+PR+QKR++LE+ ++EP+
Sbjct: 121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180
Query: 560 ISAL 571
+SAL
Sbjct: 181 VSAL 184
>BC105004-1|AAI05005.1| 312|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing A protein.
Length = 312
Score = 324 bits (796), Expect = 2e-88
Identities = 143/184 (77%), Positives = 170/184 (92%)
Frame = +2
Query: 20 MANRTVKDAKSIRGTNPQYLIEKIIRSRIYDSKYWKEECFALTAELVVDKAMELRYVGGV 199
MANRTVKDA SI GTNPQYL+EKIIR+RIY+SKYWKEECF LTAELVVDKAMELR+VGGV
Sbjct: 1 MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 60
Query: 200 HGGFIYPTPFLCLVLKMLQIQPEKDIVVEFIKNEEFKYVRALGAFYMRLTGTSVDCYKYL 379
+GG I PTPFLCL LKMLQIQPEKDI+VEFIKNE+FKYVR LGA YMRLTGT++DCYKYL
Sbjct: 61 YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120
Query: 380 EPLYNDNRKLRRQNRDGQYEIVHMDEFIDELLREERLCDIIMPRIQKRHILEQNNEIEPK 559
EPLYND RK++ QNR+G++E++H+DEFIDELL ER+CDII+PR+QKR++LE+ ++EP+
Sbjct: 121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180
Query: 560 ISAL 571
+SAL
Sbjct: 181 VSAL 184
>AL513218-9|CAI12289.1| 312|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing A protein.
Length = 312
Score = 324 bits (796), Expect = 2e-88
Identities = 143/184 (77%), Positives = 170/184 (92%)
Frame = +2
Query: 20 MANRTVKDAKSIRGTNPQYLIEKIIRSRIYDSKYWKEECFALTAELVVDKAMELRYVGGV 199
MANRTVKDA SI GTNPQYL+EKIIR+RIY+SKYWKEECF LTAELVVDKAMELR+VGGV
Sbjct: 1 MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 60
Query: 200 HGGFIYPTPFLCLVLKMLQIQPEKDIVVEFIKNEEFKYVRALGAFYMRLTGTSVDCYKYL 379
+GG I PTPFLCL LKMLQIQPEKDI+VEFIKNE+FKYVR LGA YMRLTGT++DCYKYL
Sbjct: 61 YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120
Query: 380 EPLYNDNRKLRRQNRDGQYEIVHMDEFIDELLREERLCDIIMPRIQKRHILEQNNEIEPK 559
EPLYND RK++ QNR+G++E++H+DEFIDELL ER+CDII+PR+QKR++LE+ ++EP+
Sbjct: 121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180
Query: 560 ISAL 571
+SAL
Sbjct: 181 VSAL 184
>AK092038-1|BAC03796.1| 312|Homo sapiens protein ( Homo sapiens
cDNA FLJ34719 fis, clone MESAN2005689, weakly similar to
SPLICING FACTOR, ARGININE/SERINE-RICH 2. ).
Length = 312
Score = 324 bits (796), Expect = 2e-88
Identities = 143/184 (77%), Positives = 170/184 (92%)
Frame = +2
Query: 20 MANRTVKDAKSIRGTNPQYLIEKIIRSRIYDSKYWKEECFALTAELVVDKAMELRYVGGV 199
MANRTVKDA SI GTNPQYL+EKIIR+RIY+SKYWKEECF LTAELVVDKAMELR+VGGV
Sbjct: 1 MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 60
Query: 200 HGGFIYPTPFLCLVLKMLQIQPEKDIVVEFIKNEEFKYVRALGAFYMRLTGTSVDCYKYL 379
+GG I PTPFLCL LKMLQIQPEKDI+VEFIKNE+FKYVR LGA YMRLTGT++DCYKYL
Sbjct: 61 YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120
Query: 380 EPLYNDNRKLRRQNRDGQYEIVHMDEFIDELLREERLCDIIMPRIQKRHILEQNNEIEPK 559
EPLYND RK++ QNR+G++E++H+DEFIDELL ER+CDII+PR+QKR++LE+ ++EP+
Sbjct: 121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180
Query: 560 ISAL 571
+SAL
Sbjct: 181 VSAL 184
>AK027842-1|BAB55405.1| 236|Homo sapiens protein ( Homo sapiens
cDNA FLJ14936 fis, clone PLACE1010194, weakly similar to
SPLICING FACTOR, ARGININE/SERINE-RICH 2. ).
Length = 236
Score = 183 bits (445), Expect = 7e-46
Identities = 77/108 (71%), Positives = 99/108 (91%)
Frame = +2
Query: 248 MLQIQPEKDIVVEFIKNEEFKYVRALGAFYMRLTGTSVDCYKYLEPLYNDNRKLRRQNRD 427
MLQIQPEKDI+VEFIKN +FKYVR LGA YMRLTGT++DCYKYLEPLYND RK++ QNR+
Sbjct: 1 MLQIQPEKDIIVEFIKNGDFKYVRMLGALYMRLTGTAIDCYKYLEPLYNDYRKIKSQNRN 60
Query: 428 GQYEIVHMDEFIDELLREERLCDIIMPRIQKRHILEQNNEIEPKISAL 571
G++E++H+DEFIDELL ER+CDII+PR+QKR++LE+ ++EP++SAL
Sbjct: 61 GEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPRVSAL 108
>BC132963-1|AAI32964.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 42.7 bits (96), Expect = 0.001
Identities = 30/109 (27%), Positives = 50/109 (45%)
Frame = +2
Query: 188 VGGVHGGFIYPTPFLCLVLKMLQIQPEKDIVVEFIKNEEFKYVRALGAFYMRLTGTSVDC 367
V GV G I T F CL+ K+ ++ + V+ I + + Y+RALG Y+R T D
Sbjct: 116 VRGVGTGGIVSTAF-CLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDL 174
Query: 368 YKYLEPLYNDNRKLRRQNRDGQYEIVHMDEFIDELLREERLCDIIMPRI 514
+ + E +D L + G ++ + E + L + + PRI
Sbjct: 175 WDWFESFLDDEEDL--DVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRI 221
>BC130346-1|AAI30347.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 42.7 bits (96), Expect = 0.001
Identities = 30/109 (27%), Positives = 50/109 (45%)
Frame = +2
Query: 188 VGGVHGGFIYPTPFLCLVLKMLQIQPEKDIVVEFIKNEEFKYVRALGAFYMRLTGTSVDC 367
V GV G I T F CL+ K+ ++ + V+ I + + Y+RALG Y+R T D
Sbjct: 116 VRGVGTGGIVSTAF-CLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDL 174
Query: 368 YKYLEPLYNDNRKLRRQNRDGQYEIVHMDEFIDELLREERLCDIIMPRI 514
+ + E +D L + G ++ + E + L + + PRI
Sbjct: 175 WDWFESFLDDEEDL--DVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRI 221
>BC107801-1|AAI07802.1| 383|Homo sapiens PRPF38B protein protein.
Length = 383
Score = 42.7 bits (96), Expect = 0.001
Identities = 30/109 (27%), Positives = 50/109 (45%)
Frame = +2
Query: 188 VGGVHGGFIYPTPFLCLVLKMLQIQPEKDIVVEFIKNEEFKYVRALGAFYMRLTGTSVDC 367
V GV G I T F CL+ K+ ++ + V+ I + + Y+RALG Y+R T D
Sbjct: 116 VRGVGTGGIVSTAF-CLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDL 174
Query: 368 YKYLEPLYNDNRKLRRQNRDGQYEIVHMDEFIDELLREERLCDIIMPRI 514
+ + E +D L + G ++ + E + L + + PRI
Sbjct: 175 WDWFESFLDDEEDL--DVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRI 221
>BC040127-1|AAH40127.1| 303|Homo sapiens PRPF38B protein protein.
Length = 303
Score = 42.7 bits (96), Expect = 0.001
Identities = 30/109 (27%), Positives = 50/109 (45%)
Frame = +2
Query: 188 VGGVHGGFIYPTPFLCLVLKMLQIQPEKDIVVEFIKNEEFKYVRALGAFYMRLTGTSVDC 367
V GV G I T F CL+ K+ ++ + V+ I + + Y+RALG Y+R T D
Sbjct: 116 VRGVGTGGIVSTAF-CLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDL 174
Query: 368 YKYLEPLYNDNRKLRRQNRDGQYEIVHMDEFIDELLREERLCDIIMPRI 514
+ + E +D L + G ++ + E + L + + PRI
Sbjct: 175 WDWFESFLDDEEDL--DVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRI 221
>BC024275-1|AAH24275.1| 465|Homo sapiens Unknown (protein for
IMAGE:4122390) protein.
Length = 465
Score = 42.7 bits (96), Expect = 0.001
Identities = 30/109 (27%), Positives = 50/109 (45%)
Frame = +2
Query: 188 VGGVHGGFIYPTPFLCLVLKMLQIQPEKDIVVEFIKNEEFKYVRALGAFYMRLTGTSVDC 367
V GV G I T F CL+ K+ ++ + V+ I + + Y+RALG Y+R T D
Sbjct: 116 VRGVGTGGIVSTAF-CLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDL 174
Query: 368 YKYLEPLYNDNRKLRRQNRDGQYEIVHMDEFIDELLREERLCDIIMPRI 514
+ + E +D L + G ++ + E + L + + PRI
Sbjct: 175 WDWFESFLDDEEDL--DVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRI 221
>BC016296-1|AAH16296.1| 474|Homo sapiens Unknown (protein for
IMAGE:3538108) protein.
Length = 474
Score = 42.7 bits (96), Expect = 0.001
Identities = 30/109 (27%), Positives = 50/109 (45%)
Frame = +2
Query: 188 VGGVHGGFIYPTPFLCLVLKMLQIQPEKDIVVEFIKNEEFKYVRALGAFYMRLTGTSVDC 367
V GV G I T F CL+ K+ ++ + V+ I + + Y+RALG Y+R T D
Sbjct: 116 VRGVGTGGIVSTAF-CLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDL 174
Query: 368 YKYLEPLYNDNRKLRRQNRDGQYEIVHMDEFIDELLREERLCDIIMPRI 514
+ + E +D L + G ++ + E + L + + PRI
Sbjct: 175 WDWFESFLDDEEDL--DVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRI 221
>BC007757-1|AAH07757.1| 465|Homo sapiens PRPF38B protein protein.
Length = 465
Score = 42.7 bits (96), Expect = 0.001
Identities = 30/109 (27%), Positives = 50/109 (45%)
Frame = +2
Query: 188 VGGVHGGFIYPTPFLCLVLKMLQIQPEKDIVVEFIKNEEFKYVRALGAFYMRLTGTSVDC 367
V GV G I T F CL+ K+ ++ + V+ I + + Y+RALG Y+R T D
Sbjct: 116 VRGVGTGGIVSTAF-CLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDL 174
Query: 368 YKYLEPLYNDNRKLRRQNRDGQYEIVHMDEFIDELLREERLCDIIMPRI 514
+ + E +D L + G ++ + E + L + + PRI
Sbjct: 175 WDWFESFLDDEEDL--DVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRI 221
>AL591719-6|CAH72070.1| 435|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 435
Score = 42.7 bits (96), Expect = 0.001
Identities = 30/109 (27%), Positives = 50/109 (45%)
Frame = +2
Query: 188 VGGVHGGFIYPTPFLCLVLKMLQIQPEKDIVVEFIKNEEFKYVRALGAFYMRLTGTSVDC 367
V GV G I T F CL+ K+ ++ + V+ I + + Y+RALG Y+R T D
Sbjct: 5 VRGVGTGGIVSTAF-CLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDL 63
Query: 368 YKYLEPLYNDNRKLRRQNRDGQYEIVHMDEFIDELLREERLCDIIMPRI 514
+ + E +D L + G ++ + E + L + + PRI
Sbjct: 64 WDWFESFLDDEEDL--DVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRI 110
>AL591719-5|CAH72069.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 42.7 bits (96), Expect = 0.001
Identities = 30/109 (27%), Positives = 50/109 (45%)
Frame = +2
Query: 188 VGGVHGGFIYPTPFLCLVLKMLQIQPEKDIVVEFIKNEEFKYVRALGAFYMRLTGTSVDC 367
V GV G I T F CL+ K+ ++ + V+ I + + Y+RALG Y+R T D
Sbjct: 116 VRGVGTGGIVSTAF-CLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDL 174
Query: 368 YKYLEPLYNDNRKLRRQNRDGQYEIVHMDEFIDELLREERLCDIIMPRI 514
+ + E +D L + G ++ + E + L + + PRI
Sbjct: 175 WDWFESFLDDEEDL--DVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRI 221
>AL160171-7|CAI12934.1| 435|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 435
Score = 42.7 bits (96), Expect = 0.001
Identities = 30/109 (27%), Positives = 50/109 (45%)
Frame = +2
Query: 188 VGGVHGGFIYPTPFLCLVLKMLQIQPEKDIVVEFIKNEEFKYVRALGAFYMRLTGTSVDC 367
V GV G I T F CL+ K+ ++ + V+ I + + Y+RALG Y+R T D
Sbjct: 5 VRGVGTGGIVSTAF-CLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDL 63
Query: 368 YKYLEPLYNDNRKLRRQNRDGQYEIVHMDEFIDELLREERLCDIIMPRI 514
+ + E +D L + G ++ + E + L + + PRI
Sbjct: 64 WDWFESFLDDEEDL--DVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRI 110
>AL160171-6|CAI12933.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 42.7 bits (96), Expect = 0.001
Identities = 30/109 (27%), Positives = 50/109 (45%)
Frame = +2
Query: 188 VGGVHGGFIYPTPFLCLVLKMLQIQPEKDIVVEFIKNEEFKYVRALGAFYMRLTGTSVDC 367
V GV G I T F CL+ K+ ++ + V+ I + + Y+RALG Y+R T D
Sbjct: 116 VRGVGTGGIVSTAF-CLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDL 174
Query: 368 YKYLEPLYNDNRKLRRQNRDGQYEIVHMDEFIDELLREERLCDIIMPRI 514
+ + E +D L + G ++ + E + L + + PRI
Sbjct: 175 WDWFESFLDDEEDL--DVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRI 221
>AK001192-1|BAA91546.1| 546|Homo sapiens protein ( Homo sapiens
cDNA FLJ10330 fis, clone NT2RM2000624, weakly similar to
SPLICING FACTOR, ARGININE/SERINE-RICH 4. ).
Length = 546
Score = 42.7 bits (96), Expect = 0.001
Identities = 30/109 (27%), Positives = 50/109 (45%)
Frame = +2
Query: 188 VGGVHGGFIYPTPFLCLVLKMLQIQPEKDIVVEFIKNEEFKYVRALGAFYMRLTGTSVDC 367
V GV G I T F CL+ K+ ++ + V+ I + + Y+RALG Y+R T D
Sbjct: 116 VRGVGTGGIVSTAF-CLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDL 174
Query: 368 YKYLEPLYNDNRKLRRQNRDGQYEIVHMDEFIDELLREERLCDIIMPRI 514
+ + E +D L + G ++ + E + L + + PRI
Sbjct: 175 WDWFESFLDDEEDL--DVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRI 221
>BC053838-1|AAH53838.1| 190|Homo sapiens PRPF38B protein protein.
Length = 190
Score = 40.7 bits (91), Expect = 0.005
Identities = 23/70 (32%), Positives = 36/70 (51%)
Frame = +2
Query: 188 VGGVHGGFIYPTPFLCLVLKMLQIQPEKDIVVEFIKNEEFKYVRALGAFYMRLTGTSVDC 367
V GV G I T F CL+ K+ ++ + V+ I + + Y+RALG Y+R T D
Sbjct: 116 VRGVGTGGIVSTAF-CLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDL 174
Query: 368 YKYLEPLYND 397
+ + E +D
Sbjct: 175 WDWFESFLDD 184
>AL591719-4|CAH72068.1| 190|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 190
Score = 40.7 bits (91), Expect = 0.005
Identities = 23/70 (32%), Positives = 36/70 (51%)
Frame = +2
Query: 188 VGGVHGGFIYPTPFLCLVLKMLQIQPEKDIVVEFIKNEEFKYVRALGAFYMRLTGTSVDC 367
V GV G I T F CL+ K+ ++ + V+ I + + Y+RALG Y+R T D
Sbjct: 116 VRGVGTGGIVSTAF-CLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDL 174
Query: 368 YKYLEPLYND 397
+ + E +D
Sbjct: 175 WDWFESFLDD 184
>AL160171-5|CAI12932.1| 190|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 190
Score = 40.7 bits (91), Expect = 0.005
Identities = 23/70 (32%), Positives = 36/70 (51%)
Frame = +2
Query: 188 VGGVHGGFIYPTPFLCLVLKMLQIQPEKDIVVEFIKNEEFKYVRALGAFYMRLTGTSVDC 367
V GV G I T F CL+ K+ ++ + V+ I + + Y+RALG Y+R T D
Sbjct: 116 VRGVGTGGIVSTAF-CLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDL 174
Query: 368 YKYLEPLYND 397
+ + E +D
Sbjct: 175 WDWFESFLDD 184
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,308,841
Number of Sequences: 237096
Number of extensions: 2029867
Number of successful extensions: 4011
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4011
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8511181328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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