Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13n23
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.55 
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   2.2  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   2.2  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   8.9  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   8.9  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   8.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -1

Query: 569  EPKFWARFRYSAPKY-DVSVSS 507
            E +FW R RY+ P   D+S+ S
Sbjct: 1193 EKRFWERLRYAIPSAGDISIES 1214


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 1   EKNHNKNGESYRKGREINSG 60
           E+N  KN   YRK RE + G
Sbjct: 268 EQNSYKNEREYRKYRETSKG 287


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 1   EKNHNKNGESYRKGREINSG 60
           E+N  KN   YRK RE + G
Sbjct: 279 EQNSYKNEREYRKYRETSKG 298


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
          determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 1  EKNHNKNGESYRKGRE 48
          E+N  KN + YRK RE
Sbjct: 46 EQNSYKNEKEYRKYRE 61


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
          determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 1  EKNHNKNGESYRKGRE 48
          E+N  KN + YRK RE
Sbjct: 46 EQNSYKNEKEYRKYRE 61


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
          determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 1  EKNHNKNGESYRKGRE 48
          E+N  KN + YRK RE
Sbjct: 46 EQNSYKNEKEYRKYRE 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,267
Number of Sequences: 438
Number of extensions: 4317
Number of successful extensions: 28
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)