Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13n12
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       25   0.64 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   6.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   6.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.0  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   7.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.9  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.9  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +1

Query: 493 VPREGRYNDRYLKSVPFYFYVDVISAI 573
           +P + R+N+ ++ S+ FY  + +ISAI
Sbjct: 27  LPIDMRFNEGHIVSIVFYSVLMIISAI 53


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -2

Query: 270 CCNIFQ-NFIQYLVFKYIWY*YTW 202
           C  +F  N I+++  KY+ Y Y W
Sbjct: 503 CVGVFTFNIIKFVPVKYLTYEYPW 526


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -2

Query: 270 CCNIFQ-NFIQYLVFKYIWY*YTW 202
           C  +F  N I+++  KY+ Y Y W
Sbjct: 556 CVGVFTFNIIKFVPVKYLTYEYPW 579


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +2

Query: 197 FIHVYQYQIYLKTRYWIK 250
           F H   + I+ KT  W K
Sbjct: 115 FYHAKDFDIFFKTALWAK 132



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 615 FQMNAFIFPVNSNHNRRNN 559
           FQ+  ++ PV+S +N+ N+
Sbjct: 616 FQLFLYVSPVSSEYNQYNS 634


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +2

Query: 197 FIHVYQYQIYLKTRYWIK 250
           F H   + I+ KT  W K
Sbjct: 115 FYHAKDFDIFFKTALWAK 132



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 615 FQMNAFIFPVNSNHNRRNN 559
           FQ+  ++ PV+S +N+ N+
Sbjct: 616 FQLFLYVSPVSSEYNQYNS 634


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 609 MNAFIFPVNSNHNRRNNVYVEVKRY 535
           MNA I   N + NRRN+     + Y
Sbjct: 362 MNAVIRNFNESENRRNSCLGSTETY 386


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 158 GAI*CLWLIVWYPFIHVYQYQIYLKT 235
           G I  ++LI W PF  V     Y KT
Sbjct: 275 GVIMGVFLICWVPFFCVNIVTSYCKT 300


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 459 RGQTMLRH*SDVTECQVFG 403
           R  ++L+  SDV+ C +FG
Sbjct: 2   RASSVLQAESDVSSCVIFG 20


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 459 RGQTMLRH*SDVTECQVFG 403
           R  ++L+  SDV+ C +FG
Sbjct: 2   RASSVLQAESDVSSCVIFG 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,545
Number of Sequences: 438
Number of extensions: 4456
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)