Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13n01
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    30   0.28 
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    29   0.64 
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    26   4.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   4.5  
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.8  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    25   7.8  

>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +2

Query: 182 STVQDQEQQVRKVKRTLEGWRVALLSLKSVILWEQ 286
           S +   E++++K +R+ +GW + L  L+S  ++EQ
Sbjct: 24  SAIAATEKELQKAQRSQQGWNIGLFMLQSKDVYEQ 58


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = +2

Query: 251 LLSLKSVILWEQQWHPCAIVGSMTIMYLLIWLLDLNTLASIAIVGLILNFVDFMVPVICN 430
           L+  KS    E + H   ++ ++  +     L++ + +   AIV L+L  +D   PVIC 
Sbjct: 536 LIKRKSAFGTELRDHADELLQTLISLQNRFDLMNFDEMQMTAIVELLLTCLDICGPVICT 595

Query: 431 QLYGS 445
            L+ S
Sbjct: 596 NLFVS 600


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
 Frame = +2

Query: 227 TLEGWRVALLSLKSVILWEQQW-HPCAI----VGSMTIMYLLIWLLDLNTLASIAIVGLI 391
           T   W + L    ++   +Q+W HP  I    V +  I Y+L+W +   +L  +   G +
Sbjct: 333 TFAKWSIPLFLSSALEFAQQRWPHPFLIPSFFVIAPAIFYVLVWAIPGMSLEYLRETGWV 392

Query: 392 LNFVDFMVP 418
            +  +  VP
Sbjct: 393 FSSTETNVP 401


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 88   FFFHKLQGNYSKFVGNQKEKILPATH 11
            + F  +QGN+SKF  N +++++ + H
Sbjct: 1033 YAFDVIQGNHSKFTTNLQKEVIISPH 1058


>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 100 MQFDFFFHKLQGNYSKFVG-NQKE 32
           ++FD  F KLQGN    +G N KE
Sbjct: 150 LEFDSLFEKLQGNKFAILGANSKE 173


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +2

Query: 83  KEIELHCLLSF**E*QEQLIKDDNFIAKMGEKSSTVQDQEQQVRKVKRTLEGWRVALLSL 262
           KE+E +  LSF  E ++ L      I     K+  + + E  +  +K   E W+   ++ 
Sbjct: 298 KELENNPTLSFNPELEKNLKLMQELIVAESSKTQHIVELESCIDSLKAETERWKKVAINA 357

Query: 263 KS 268
           KS
Sbjct: 358 KS 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,895,202
Number of Sequences: 5004
Number of extensions: 59065
Number of successful extensions: 172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)