Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13n01
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016420-8|AAB65305.1|  364|Caenorhabditis elegans Serpentine re...    32   0.45 
Z93381-3|CAB07606.1|  362|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z79639-2|CAB01915.1|  367|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF016439-4|AAV28339.1|  489|Caenorhabditis elegans Hypothetical ...    29   4.2  
AF016439-3|AAB65899.2|  467|Caenorhabditis elegans Hypothetical ...    29   4.2  
U51995-4|AAA96072.2|  317|Caenorhabditis elegans F-box a protein...    28   5.5  
AC024791-2|AAK95891.1|  604|Caenorhabditis elegans Temporarily a...    28   7.3  
Z75554-9|CAA99952.2|  278|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AL117200-9|CAB60586.1|  807|Caenorhabditis elegans Hypothetical ...    27   9.7  
AF000264-2|AAC71121.1|  761|Caenorhabditis elegans Half transpor...    27   9.7  
AC024847-6|AAF60855.1|  909|Caenorhabditis elegans Patched relat...    27   9.7  

>AF016420-8|AAB65305.1|  364|Caenorhabditis elegans Serpentine
           receptor, class r protein5 protein.
          Length = 364

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +2

Query: 416 PVICNQ--LYGSSSWTGQHEKTFEEICRSIVISYNKLVIYIHSFYSLRDTS 562
           P+ C    + G+  W G H+   +    SI++ YN   +   +F+SLR  S
Sbjct: 245 PIACFNACVNGTYMWFGFHDFPMDSSISSIILKYNIFAVLFITFFSLRPAS 295


>Z93381-3|CAB07606.1|  362|Caenorhabditis elegans Hypothetical
           protein F28G4.3 protein.
          Length = 362

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 512 NKLVIYIHSFYSLRDTSPFMYYTISISTL 598
           N+ +I IHSFY L  T  ++ Y+++++ L
Sbjct: 118 NQAMISIHSFYKLNPTGRYILYSLNLTEL 146


>Z79639-2|CAB01915.1|  367|Caenorhabditis elegans Hypothetical
           protein F54E4.2 protein.
          Length = 367

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
 Frame = +2

Query: 275 LWEQQWH---PCAIVGSMTIMYLLIWLLDLNTLASIAI--VGLILNFVDFMVPVI 424
           LW   WH   PC IV  ++ MYLL+ +   N    + I     + N VD  +  +
Sbjct: 134 LWRSPWHMVIPCFIVAIISNMYLLVAVKQENFQCILIIDEYSTLYNSVDVFISTL 188


>AF016439-4|AAV28339.1|  489|Caenorhabditis elegans Hypothetical
           protein R02F11.3b protein.
          Length = 489

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +2

Query: 356 NTLASIAIVGLILNFVDFMVPVICNQLYGSSSWTGQHEKTFEEICRSIVISYNKLVI 526
           NT A +A + L +NF+  +  V+ + L GS S       +  +I   +VIS ++ +I
Sbjct: 189 NTAARMANITLAVNFLLMIAKVVASVLSGSMSIISSMVDSVVDITSGLVISLSERMI 245


>AF016439-3|AAB65899.2|  467|Caenorhabditis elegans Hypothetical
           protein R02F11.3a protein.
          Length = 467

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +2

Query: 356 NTLASIAIVGLILNFVDFMVPVICNQLYGSSSWTGQHEKTFEEICRSIVISYNKLVI 526
           NT A +A + L +NF+  +  V+ + L GS S       +  +I   +VIS ++ +I
Sbjct: 167 NTAARMANITLAVNFLLMIAKVVASVLSGSMSIISSMVDSVVDITSGLVISLSERMI 223


>U51995-4|AAA96072.2|  317|Caenorhabditis elegans F-box a protein
           protein 53 protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 218 VKRTLEGWRVALLSLKSVILWEQQWHPCAIVGSM 319
           V+R L+ +++     ++V++W    H C IV S+
Sbjct: 107 VERALKDFKILSNHARNVVIWNMTEHGCGIVSSL 140


>AC024791-2|AAK95891.1|  604|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 63 protein.
          Length = 604

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = -3

Query: 486 ISSNVFSCCPVQELDP*SWLHITGTIKSTKLRMRPTIAIEARVLRSNNQMRRY 328
           ISS+  S  P++   P S    T  IKS   R R + ++E  V RS  +  RY
Sbjct: 209 ISSSHVSGIPLRRRSPFSSSKSTAPIKSRHYRSRFSESLEDNVFRSPERHSRY 261


>Z75554-9|CAA99952.2|  278|Caenorhabditis elegans Hypothetical
           protein ZC455.11 protein.
          Length = 278

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 542 RMNGCKSPIYCSLLQCFYKFLQMSSRVVLSKN 447
           R++GC S  YCSL  CF  +  ++  +  S N
Sbjct: 155 RVDGCAS-FYCSLTTCFQSYAVITRIIYTSTN 185


>AL117200-9|CAB60586.1|  807|Caenorhabditis elegans Hypothetical
           protein Y50E8A.16 protein.
          Length = 807

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 23/98 (23%), Positives = 41/98 (41%)
 Frame = +2

Query: 305 IVGSMTIMYLLIWLLDLNTLASIAIVGLILNFVDFMVPVICNQLYGSSSWTGQHEKTFEE 484
           + GS  IM+   W L ++T  +  I+ L   F   +V  +  +    +  T    +T EE
Sbjct: 359 LFGSAPIMFYYSWQLAISTFVTFPIILLTTKFYGLIVEKLSEK---ENDATAVSNETVEE 415

Query: 485 ICRSIVISYNKLVIYIHSFYSLRDTSPFMYYTISISTL 598
           +  +I    +     I +    RDT    ++ IS  T+
Sbjct: 416 VLSAIRTVRSFAAEKIENMRYTRDTD--AWFKISTKTV 451


>AF000264-2|AAC71121.1|  761|Caenorhabditis elegans Half transporter
           (pgp related)protein 2 protein.
          Length = 761

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/65 (21%), Positives = 29/65 (44%)
 Frame = +2

Query: 305 IVGSMTIMYLLIWLLDLNTLASIAIVGLILNFVDFMVPVICNQLYGSSSWTGQHEKTFEE 484
           ++G++  M L+ W L + T  ++ +VG I          I  +L  + + T Q  +    
Sbjct: 325 LIGALAFMILMSWRLAMVTFIAVPLVGFITKAYSSFYDKISEKLQQTIAETNQMAEEVVS 384

Query: 485 ICRSI 499
             R++
Sbjct: 385 TMRTV 389


>AC024847-6|AAF60855.1|  909|Caenorhabditis elegans Patched related
           family protein 21 protein.
          Length = 909

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 329 YLLIWLLDLNTLASIAIVGLILNFVDFMVPVICN 430
           YL  W LDL+ +   A++  I   VDF+  V C+
Sbjct: 741 YLCFWDLDLDPVTLCAVIVSIGMSVDFVAHVACH 774


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,906,359
Number of Sequences: 27780
Number of extensions: 324830
Number of successful extensions: 933
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)