Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13n01
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   4.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   6.4  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   6.4  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        22   6.4  

>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 570 CITLSPSVHC 599
           C+  SPSVHC
Sbjct: 13  CLICSPSVHC 22


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = +2

Query: 242 RVALLSLKSVILWEQQWHPCAIVGSMTIMYLL 337
           ++A ++L ++ LW   W P  ++    I  L+
Sbjct: 275 KLAKVALMTISLWFMAWTPYLVINFSGIFNLV 306


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 316 NDNYVSSHLVIRSQYSSFNCY 378
           N NYV++   ++SQY + N +
Sbjct: 272 NLNYVNTEQFVKSQYQANNVH 292


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = +2

Query: 242 RVALLSLKSVILWEQQWHPCAIVGSMTIMYLL 337
           ++A ++L ++ LW   W P  ++    I  L+
Sbjct: 25  KLAKVALMTISLWFMAWTPYLVINFSGIFNLV 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,469
Number of Sequences: 438
Number of extensions: 4211
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)