Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13m24
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   3.5  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    26   6.1  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    25   8.0  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    25   8.0  

>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 553 TPSMYGATTNDIYSDAGPGSSLDLDTNRPVFSEDTYRPDNE 675
           TP+    T N+ Y+ A P  S   D    VFS+ ++  + +
Sbjct: 469 TPTASSTTANNAYASAEPHPSAFPDDMNSVFSDSSFERERD 509


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +1

Query: 475 LPGSYIGQILRDRKNGKIGGT--SMPVQTPSMYGATTNDI 588
           LP SY   +     N  +  T  S PV TPS Y AT ND+
Sbjct: 99  LPSSYKYLLSNSGANFTLQFTTPSGPVSTPSTYVATYNDL 138


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 152 RKIVIVTRSLAPATHVLPSETSHTHCATTNSHKTKLK 262
           +K+V++ RSL   TH++P     +      +H T LK
Sbjct: 172 KKLVVLFRSLYTYTHLMPLWKLKSKIHKLRAHGTSLK 208


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 265 LEECDKESFYQRCLPFSALFASLTYAAVK 351
           L+E  ++SFY+  L  ++L  SLTY  ++
Sbjct: 481 LDETTRKSFYRIILSSNSLSTSLTYPLIE 509


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,132,871
Number of Sequences: 5004
Number of extensions: 68448
Number of successful extensions: 202
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)