Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13m20
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    28   1.4  
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    27   1.9  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    27   3.3  
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c...    27   3.3  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    26   5.8  
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    26   5.8  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    26   5.8  

>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = -2

Query: 566 RYLKLVSDIVPDPVLFNRLLRLDVYLCKFIYAMKCFKVFFKISD*LENVRSMS 408
           RYL L SD +P  ++F+R  +L      F+ +      F  I + L++++ ++
Sbjct: 488 RYLSLFSDDIPQKLIFDRYFKLAKTTTPFVVSEGALSTF--IIEYLDHIKGLT 538


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 348 NLTQDRAIVLRIIEVFDNFFTHRADIFKLIGYLKKYFETFHCIDK 482
           ++ Q    + R+IEV D     R D   ++ Y+ +YF  F  +DK
Sbjct: 190 DIAQKSIGIPRLIEVEDVCDVDRPDERSIMTYVAEYFHAFSTLDK 234


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 146 LAQFGNKYGPQTI*YY*MKTSEKFAEWL 229
           +A FGN Y  +TI  + +K   KF+E++
Sbjct: 590 IADFGNAYKEETIPQFRIKKEAKFSEFI 617


>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 423 IFKLIGYLKKYFETFHC 473
           +F L  +L++YF +FHC
Sbjct: 10  VFALYKFLQRYFHSFHC 26


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 309 IQFIRLTPLQEHSNLTQDRAIVLRIIEVFDNFFTHRADIFKL 434
           +Q   L    E++ L +D   V  IIE  D     +AD+ KL
Sbjct: 663 LQLTSLKQKGEYATLAKDAEAVQHIIEERDYALAEKADLLKL 704


>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 196 NENIGKIRGMAVENRLFCNTLG 261
           NEN+GK    +   R+FC   G
Sbjct: 54  NENVGKYASSSFAERIFCKNCG 75


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 222 NGCGESTVLQHFGKAYSASFISP 290
           NGCG+ST+L+  G     +F SP
Sbjct: 479 NGCGKSTLLRAIGDYKVENFPSP 501


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,688,846
Number of Sequences: 5004
Number of extensions: 55893
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)