Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13m17
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    69   3e-14
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    50   2e-08
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    36   4e-04
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.74 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   6.9  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   9.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.1  

>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 69.3 bits (162), Expect = 3e-14
 Identities = 36/96 (37%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
 Frame = +1

Query: 343 MPSIAGK-YQHYKNEDIDDYFSAVGVPFMGRKMMSMSSPLMEISIDGDTMTIKNSSLLRT 519
           MP   GK Y+ Y +E+ DD+  A+GV  M RK+ S  SP++E++ +    T+K +S  + 
Sbjct: 1   MPDFLGKRYKLYSSENFDDFMKALGVGIMTRKVGSSVSPVVELTENNGLYTLKTTSPFKN 60

Query: 520 VEHKFKLGEEYEEK-MPNSIIKSVTTITNDSEMETK 624
            E KFKLGEE+EE+ +    +KSV T+  +  ++ +
Sbjct: 61  TEIKFKLGEEFEEETVDGRKVKSVCTLDGNKLIQVQ 96


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 50.4 bits (115), Expect = 2e-08
 Identities = 32/134 (23%), Positives = 64/134 (47%), Gaps = 2/134 (1%)
 Frame = +1

Query: 343 MPSIAGKYQHYKNEDIDDYFSAVGVPFMGRKMMSMSSPLMEISIDGDTMTIKNSSLLRTV 522
           M    GK+Q     + +++   +G   +   ++    P  E+S +GD  T  +SS   T 
Sbjct: 1   MVQFEGKFQFVSQNNFEEFAKVLGDQNLVNTVLQ-PRPSFELSKNGDEWTFTSSSGDNTY 59

Query: 523 EHKFKLGEEYEEKMPNSIIKSVTTITN--DSEMETKSVIPDTGAKCGRHYQFTDEECIVT 696
              FK+   +EE +P+   +   T+T+   +  +T++ + D+  K  R Y+F+D E +V 
Sbjct: 60  TKTFKMNVPFEETLPSLPDRKFQTVTSIEGNTFKTETQVNDS-LKVTRLYEFSDNELLVH 118

Query: 697 LTHENASVSGKRYF 738
           ++   + V   R +
Sbjct: 119 ISTNKSDVKATRVY 132


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 35.9 bits (79), Expect = 4e-04
 Identities = 20/82 (24%), Positives = 39/82 (47%)
 Frame = +1

Query: 358 GKYQHYKNEDIDDYFSAVGVPFMGRKMMSMSSPLMEISIDGDTMTIKNSSLLRTVEHKFK 537
           GK+Q     + +++   +G   +   ++    P  E+S +GD  T  +SS   T    FK
Sbjct: 4   GKFQFVSQNNFEEFAKVLGDQNLVNTVLQ-PRPSFELSKNGDEWTFTSSSGDNTYTKTFK 62

Query: 538 LGEEYEEKMPNSIIKSVTTITN 603
           +   +EE +P+   +   T+T+
Sbjct: 63  MNVPFEETLPSLPDRKFQTVTS 84


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 208 LYFINCNYLSFIRD**FFDKI*IT 279
           L FIN NY++ +R   F DK+ +T
Sbjct: 621 LLFINNNYINLVRPNTFTDKVNLT 644


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 544 EEYEEKMPNSIIKSVTTITNDSEMETKSVI 633
           + YE  +P+ ++ SVT++  D EM +   I
Sbjct: 111 KSYEIWVPDIVMHSVTSVGIDLEMPSVECI 140


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 417 TIYGSKNDVNVITINGNFN*WGYYDYKKFIIVTNSRTQI 533
           TI+ + N  N    N N+N   Y +YKK     N   QI
Sbjct: 89  TIHNNNNYNNNNYNNYNYNNNNYNNYKKLYYNINYIEQI 127


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 30  RRYLPTYIKFSNK 68
           R Y P YIK++N+
Sbjct: 471 REYCPRYIKWTNR 483


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,668
Number of Sequences: 438
Number of extensions: 4218
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)