Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13m14
         (338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    28   0.45 
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    27   1.0  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    25   4.2  
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           23   9.6  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    23   9.6  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    23   9.6  
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    23   9.6  
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy...    23   9.6  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.9 bits (59), Expect = 0.45
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 254  LNVFSQNFHIFIFYEQFLDNQGHLNNLRIILLFV 153
            L+ FSQ FH F+     L +  HL  L + LLF+
Sbjct: 1016 LSKFSQKFHGFLILHDNLKDHIHLEELWLNLLFL 1049


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 266 QWIQLNVFSQNFHIFIFYEQFLDNQGHLNNLRIILLF 156
           Q ++L+     F + +FY+   DN G LNN  +  LF
Sbjct: 297 QIVELSPKGYRFLVDLFYQFDRDNDGALNNEELSALF 333


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +3

Query: 63  ISETSKLTTMCXLGWAVAXSLFSY--IFLSPNHK 158
           +S +   T  C + W    SLF+Y  I +S NH+
Sbjct: 315 VSTSDPYTLACLVSWRDNASLFNYAAIIISFNHQ 348


>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 252 QLYPL*AL*QRIVISLEYCNKKH 320
           Q  PL  L +++ + L  CNKKH
Sbjct: 51  QCAPLNDLTKQVCVELMQCNKKH 73


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 165 DNSKVIKMSLVI*KLFIKYENVKVLRE 245
           DN KVI +     +LF KY+++ +++E
Sbjct: 17  DNDKVIVVVTKNLELFKKYDDINLIKE 43


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 272 SLQWIQLNVFSQNFHIFIFYEQFLDNQGHLNNLRIIL 162
           SL+  + N+  Q      ++E+ LDNQ  L +LRI L
Sbjct: 639 SLKTSKTNLEEQTQLAEKYHEELLDNQQKLYDLRIEL 675


>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 272 SLQWIQLNVFSQNFHIFIFYEQF 204
           +L++I L VFS N +   FY  F
Sbjct: 147 NLKYIFLTVFSANLNALNFYHHF 169


>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 299

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 260 IQLNVFSQNFHIFIFYEQFLDNQGHLNNLR 171
           I LN+      +FIF EQ +D+   +  LR
Sbjct: 224 IHLNILCVIAQMFIFREQLIDHPSPMTLLR 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,329,882
Number of Sequences: 5004
Number of extensions: 23553
Number of successful extensions: 45
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)