Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13m12
         (210 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical pr...    25   7.3  
Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical pr...    25   7.3  
Z70211-2|CAA94158.2|  272|Caenorhabditis elegans Hypothetical pr...    25   7.3  
Z49937-1|CAA90184.2|  670|Caenorhabditis elegans Hypothetical pr...    25   7.3  
AC024859-21|AAK29962.4|  490|Caenorhabditis elegans Twik family ...    25   7.3  
AC024853-4|AAK68586.1|  746|Caenorhabditis elegans Hypothetical ...    25   7.3  
U64600-2|AAK39200.2|  519|Caenorhabditis elegans Twik family of ...    25   9.7  
AF083653-1|AAC32864.1|  484|Caenorhabditis elegans putative pota...    25   9.7  

>Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical
           protein C09H6.1b protein.
          Length = 1309

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 174 ITIALNTDGCHRRHPRRYVSEFNISSCSTCKW*CTESR 61
           +T+AL   GC  RH R +     I+ CS C +   + R
Sbjct: 802 VTLAL---GCLWRHHRNHRDTAKINICSNCSYSSIDQR 836


>Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical
           protein C09H6.1a protein.
          Length = 1311

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 174 ITIALNTDGCHRRHPRRYVSEFNISSCSTCKW*CTESR 61
           +T+AL   GC  RH R +     I+ CS C +   + R
Sbjct: 802 VTLAL---GCLWRHHRNHRDTAKINICSNCSYSSIDQR 836


>Z70211-2|CAA94158.2|  272|Caenorhabditis elegans Hypothetical
           protein K11E4.2 protein.
          Length = 272

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 108 NISSCSTCKW*CTESRGRSMGRSKNRRVLHTYSYRD 1
           NISS +   +   + R   +GR KN ++ H Y YR+
Sbjct: 92  NISSFTITCFHIQDGRTHLLGRYKNNQISH-YKYRE 126


>Z49937-1|CAA90184.2|  670|Caenorhabditis elegans Hypothetical
           protein F14F3.2 protein.
          Length = 670

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 103 YVKFGNISTRVSSMTTISVKCNSDVL 180
           YV+   I T   ++  ++ KCNS VL
Sbjct: 621 YVRHEKIDTLTDAVVLLNAKCNSPVL 646


>AC024859-21|AAK29962.4|  490|Caenorhabditis elegans Twik family of
           potassium channelsprotein 45, isoform a protein.
          Length = 490

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 209 FFFTLIFYLHKTSLLHLTLMVVI 141
           FF  L +Y HK  + H+TL+ ++
Sbjct: 36  FFAWLAYYHHKFGIRHITLISIL 58


>AC024853-4|AAK68586.1|  746|Caenorhabditis elegans Hypothetical
           protein Y71F9AR.3 protein.
          Length = 746

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -2

Query: 200 TLIFYLHKTSLLHLTLMVVIDDTRVDMFPN 111
           T+ F+  ++S LH+   + I D+ + ++PN
Sbjct: 561 TMTFHKRRSSPLHIGATISILDSSITVYPN 590


>U64600-2|AAK39200.2|  519|Caenorhabditis elegans Twik family of
           potassium channelsprotein 26 protein.
          Length = 519

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 209 FFFTLIFYLHKTSLLHLTLMVVI 141
           FF  L +Y HK  + H+TL+ ++
Sbjct: 71  FFAWLAYYHHKFGIRHVTLIALL 93


>AF083653-1|AAC32864.1|  484|Caenorhabditis elegans putative
           potassium channel subunitn2P26 protein.
          Length = 484

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 209 FFFTLIFYLHKTSLLHLTLMVVI 141
           FF  L +Y HK  + H+TL+ ++
Sbjct: 36  FFAWLAYYHHKFGIRHVTLIALL 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,514,349
Number of Sequences: 27780
Number of extensions: 46069
Number of successful extensions: 172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 12,740,198
effective HSP length: 49
effective length of database: 11,378,978
effective search space used: 227579560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)