Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13m07
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    28   0.99 
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr...    28   0.99 
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    27   1.7  
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    27   1.7  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    27   3.0  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    26   4.0  
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce...    26   4.0  
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S...    26   4.0  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    26   4.0  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   7.0  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    25   7.0  
SPAC23C11.17 |||mitochondrial inner membrane protein involved in...    25   7.0  
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce...    25   7.0  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    25   9.2  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 12/49 (24%), Positives = 28/49 (57%)
 Frame = -3

Query: 525 LSSDEILSSSAVAVTFSEKILKMMSWIMPLFVALCTFGSLNGAIYTSSR 379
           L++D++LS   +++ F+EK  ++ SW   +   +C   + +  + TS +
Sbjct: 451 LTNDDLLSIQKMSLNFTEKKNELQSWSFFILFNICYNKAYSSMLTTSCK 499


>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 514

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +2

Query: 383 EEVYMAPLRDPNVHRATKSGII---QDIILRIF 472
           +E  M  + DPNVH  T +G+    QD++ +IF
Sbjct: 186 QEAQMTTVTDPNVHCITVNGVFDDCQDLVKQIF 218


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 7/126 (5%)
 Frame = -3

Query: 612 SRNLPRAICISMPVVTLVYTLTNVAYFAVLSSDEILSSSAVAVTFSEKILKMMS------ 451
           ++  P+A+      V+L Y L       ++S  +   ++  A   S  IL +M       
Sbjct: 300 AKAFPKAVKQVFIRVSLFYILALFVVSLLISGRDERLTTLSATAASPFILALMDAKIRGL 359

Query: 450 -WIMPLFVALCTFGSLNGAIYTSSRLFFVGARNGHLPLAISLIDIKRLTPVPSLIFMVSS 274
             ++   + +    + NG  YT SR     A  GH P     +D +   P+ ++ F++  
Sbjct: 360 PHVLNAVILISVLTAANGITYTGSRTLHSMAEQGHAPKWFKYVD-REGRPLLAMAFVLCF 418

Query: 273 LIISFI 256
             + +I
Sbjct: 419 GALGYI 424


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 28/137 (20%), Positives = 61/137 (44%), Gaps = 5/137 (3%)
 Frame = -3

Query: 612 SRNLPRAICISMPVVTLVYTLTNV--AYFAVLSSDEILSSSAVAVTFSEKILKMMSWIMP 439
           S N PR I ++  +  ++  +  +  AY  V  +  +  S ++  T+  + L   + +  
Sbjct: 291 SVNAPRGIILTAAIGGIMGWVMQIVIAYTVVDQTAVVTGSDSMWATYLSQCLPKRAALGI 350

Query: 438 LFVALCT-FGSLNGAIYTSSRLFFVGARNGHLPLAISLIDIKRLTPVPSLIFMVSSLI-- 268
           L + + + F      +  SSR+ +  AR+G LP +  +  +  +T  P     V+ +I  
Sbjct: 351 LSLTIVSSFLMGQSNLIASSRIAYSYARDGVLPYSEWVATVNPITKTPIRAVFVNFVIGV 410

Query: 267 ISFIIALNGSMNTRLIF 217
           +   +A  G++    +F
Sbjct: 411 LILFLAFAGAITIGAVF 427


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = -2

Query: 583 IYAGRDLGLHANQRRLFRCIVQ*RNPFVLRRRCYVQRENSQNDVLDNAALRGS 425
           I  G++  L  N +++F+ I+Q R PF   +   +Q+E  +  + D ++ + S
Sbjct: 22  IIGGQNNFLENNLQQIFQKIIQERGPFRDLKEEDLQKELQKESIKDESSAKSS 74


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = -3

Query: 378 LFFVGARNGHLPL----AISLID-IKRLTPVPSLIFMVSSLIISFIIALNGSMNTRLIFF 214
           L F+G++N    L     +  +D I  L P+  L+ + + +  SF++      N  LI+F
Sbjct: 315 LLFIGSKNSESKLINLSTLKDVDSIPNLGPIHDLLVLKNDIEKSFLVCAGTPRNASLIYF 374


>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/53 (22%), Positives = 28/53 (52%)
 Frame = -3

Query: 426 LCTFGSLNGAIYTSSRLFFVGARNGHLPLAISLIDIKRLTPVPSLIFMVSSLI 268
           +C+F    G +  +SR+ +  AR+G  P +  L  + + T  P++   ++ ++
Sbjct: 340 ICSFMMGQGCMVAASRVTYSYARDGVFPFSKYLAIVDKRTKTPNVCVWMNVVV 392


>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
           Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 231 TRLIFFYFLFIDAQNKL 181
           TR +FF FLFI  +NKL
Sbjct: 327 TRYVFFLFLFIIERNKL 343


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
 Frame = -3

Query: 525 LSSDEILSSSAVAVTFSEKILKMMSWIMPLFVALCTFGSLNGAIYTSSRLFFVGARNGHL 346
           L+ +  +S  A       K L M+  I+ L + L T       I+TS  L  +      +
Sbjct: 712 LNVETSMSDEAFNADKVTKGLLMLLIILFLLIILVTKNKRRRKIFTSPSLQAMVVAQDEV 771

Query: 345 PLAISLIDIK-RLTPVPSLIFMVSSL 271
           P  ISL DI+ +  P  S ++ + SL
Sbjct: 772 PEGISLADIENKENPSNSNVYSLISL 797


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -1

Query: 533 SLYCPVTKSFRPPP 492
           SL  PVTKS RPPP
Sbjct: 616 SLAFPVTKSCRPPP 629


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
 Frame = -3

Query: 573 VVTLVYTL--TNVAYFAVLSSDEILSSSAVAVTFSEKILKMMSWIMPLFVALCTFGSLNG 400
           +V  +Y L  +NV Y  + S+ +    S  A    ++    M+ +  L +   T  SL+ 
Sbjct: 304 IVMFLYCLPPSNVMYELIKSNSQQPFVSFYAYALGKRAHVFMNVVGILGMIFDT--SLS- 360

Query: 399 AIYTSSRLFFVGARNGHLPLA--ISLIDIK-RLTPVPSLIFMVSSLII 265
            I  SSRL F  AR+G LP +  +  +D   + T   + IF++S+ ++
Sbjct: 361 -IVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTFIFLISAALL 407


>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
           potassium ion transport|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = +2

Query: 242 PFSAIIKEIINELTINMSEGTGVNLLMSMSEIAKGKCPFLAPTKKSREEV 391
           PFS  +     EL + ++     NLL S  E AK K    A  +K+R EV
Sbjct: 176 PFSVFVVVPFAELLLPIAVKLFPNLLPSTFEDAKDKEAKKAQLRKTRNEV 225


>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -3

Query: 399 AIYTSSRLFFVGARNGHLPLA--ISLIDIKRLTPVPSLIFMVSSLIISFIIALNGSMNTR 226
           A+  SSR+ +  AR+G LP +  I  ++    TPV ++I      I+   +   G++   
Sbjct: 370 ALIASSRIAYSYARDGILPFSGWIGTVNPYTQTPVNAVICNCIISILILFLTFAGTVTLD 429

Query: 225 LIF 217
            +F
Sbjct: 430 AVF 432


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 367 DEEKSRGSVYGAVEGSKCTQSHEERHYPRHHFENFLAERNSDG 495
           D+EK R +++   + +  T     RH P H    FL +  SDG
Sbjct: 707 DDEKFRATIH---DDNTFTLHFFNRHSPFHLISQFLQDTFSDG 746


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,629
Number of Sequences: 5004
Number of extensions: 51403
Number of successful extensions: 157
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)