Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13m07
(638 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 25 0.82
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 24 1.1
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 24 1.1
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 24 1.1
AJ780964-1|CAG62942.2| 332|Apis mellifera putative corticotropi... 23 1.9
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 23 2.5
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 22 4.4
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 22 4.4
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 22 4.4
AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cycl... 22 4.4
AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cycl... 22 5.8
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 24.6 bits (51), Expect = 0.82
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +2
Query: 401 PLRDPNVHRATKSGIIQDIILRIFSLNVTATAEDERISSLDNT 529
PL+ N KS + + + F N T SSLDNT
Sbjct: 326 PLKKVNSKYILKSTLTPKLARKQFQKNTTGLERSRSWSSLDNT 368
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 24.2 bits (50), Expect = 1.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 625 LFNYFQESSTSYLHIYAGRDL 563
+FN FQ+ S S+ ++AGR L
Sbjct: 185 IFNQFQDFSESFQILHAGRAL 205
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 24.2 bits (50), Expect = 1.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 625 LFNYFQESSTSYLHIYAGRDL 563
+FN FQ+ S S+ ++AGR L
Sbjct: 185 IFNQFQDFSESFQILHAGRAL 205
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 24.2 bits (50), Expect = 1.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 625 LFNYFQESSTSYLHIYAGRDL 563
+FN FQ+ S S+ ++AGR L
Sbjct: 185 IFNQFQDFSESFQILHAGRAL 205
>AJ780964-1|CAG62942.2| 332|Apis mellifera putative corticotropin
releasing hormone-binding protein protein.
Length = 332
Score = 23.4 bits (48), Expect = 1.9
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -3
Query: 408 LNGAIYTSSRLFFV 367
LNG++Y +RLFF+
Sbjct: 3 LNGSLYCFARLFFI 16
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 23.0 bits (47), Expect = 2.5
Identities = 9/37 (24%), Positives = 19/37 (51%)
Frame = -3
Query: 570 VTLVYTLTNVAYFAVLSSDEILSSSAVAVTFSEKILK 460
V+++Y +N A +E+L + + EK++K
Sbjct: 283 VSIIYEESNYGIKAFEELEELLGKRNICIAIKEKLVK 319
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 22.2 bits (45), Expect = 4.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 106 MCTQKNHINVHSFGY*KHN*NYKY 35
M Q HI + SFGY + YK+
Sbjct: 147 MDRQLCHIEIESFGYTMRDIRYKW 170
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 22.2 bits (45), Expect = 4.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 106 MCTQKNHINVHSFGY*KHN*NYKY 35
M Q HI + SFGY + YK+
Sbjct: 147 MDRQLCHIEIESFGYTMRDIRYKW 170
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 22.2 bits (45), Expect = 4.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 106 MCTQKNHINVHSFGY*KHN*NYKY 35
M Q HI + SFGY + YK+
Sbjct: 86 MDRQLCHIEIESFGYTMRDIRYKW 109
>AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cyclase
beta-3 protein.
Length = 832
Score = 22.2 bits (45), Expect = 4.4
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = -3
Query: 528 VLSSDEILSSSAVAVTFSEKILKMMSWIMPLFVALCTFGSLNGAIYT 388
+L SDE+ S + +++ M +W M +++ LN I T
Sbjct: 290 ILLSDELDSVDDRTLRLKGQMIYMDNWKMMMYLGTPVMPDLNALIAT 336
>AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cyclase
alpha 1 subunit protein.
Length = 699
Score = 21.8 bits (44), Expect = 5.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 343 R*MSVPGTDEEKSRG 387
R +S PG DE+ SRG
Sbjct: 7 RDLSKPGCDEQTSRG 21
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,241
Number of Sequences: 438
Number of extensions: 3428
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -