Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13m05
(604 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1353 - 25966332-25966421,25966477-25966528,25966612-259668... 161 5e-40
05_03_0671 + 16831185-16831254,16832017-16832084,16832318-168323... 157 8e-39
11_08_0079 + 28189782-28189907,28190445-28190553,28190876-281909... 42 5e-04
07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262... 40 0.002
07_01_0075 - 558829-560859 37 0.011
06_01_0668 - 4882174-4884204 37 0.011
03_06_0323 + 33121062-33121653,33121748-33121839,33122482-331225... 35 0.043
08_01_0387 - 3426058-3426168,3426279-3426473,3426612-3426724,342... 35 0.057
10_03_0019 - 7123502-7123673,7124145-7124226,7124228-7124394,712... 31 0.93
12_02_1203 + 26959225-26959340,26959644-26959776 28 6.5
03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,446... 28 6.5
01_06_0191 - 27334412-27335155 28 6.5
10_08_1008 - 22222051-22222377,22222479-22222640,22223179-222233... 27 8.7
>07_03_1353 -
25966332-25966421,25966477-25966528,25966612-25966803,
25966900-25967199,25967816-25967925,25968696-25968755,
25968835-25968906,25969172-25969348,25969845-25969898,
25970188-25970217,25970985-25971026
Length = 392
Score = 161 bits (390), Expect = 5e-40
Identities = 81/115 (70%), Positives = 87/115 (75%), Gaps = 2/115 (1%)
Frame = +3
Query: 264 ARTQKNKATEYHLGLLKAKLAKYRSQLLEPSKKGGD--KGEGFDVLKSGDARVALIGFPS 437
ARTQKNKAT +HLGLLKAKLAK R +LL P+ KGG GEGFDV KSGDARV L+GFPS
Sbjct: 26 ARTQKNKATAHHLGLLKAKLAKLRRELLTPTSKGGGGGAGEGFDVTKSGDARVGLVGFPS 85
Query: 438 VGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGANIQLLDLPGIIEGAAQGK 602
VGK E A+YEFTTLTCIPGVI Y+GA IQLLDLPGIIEGA GK
Sbjct: 86 VGKSTLLNKLTGTFSEVAAYEFTTLTCIPGVIMYKGAKIQLLDLPGIIEGAKDGK 140
>05_03_0671 +
16831185-16831254,16832017-16832084,16832318-16832394,
16832910-16833090,16833192-16833248,16834182-16834256,
16834820-16834939,16835018-16835224
Length = 284
Score = 157 bits (380), Expect = 8e-39
Identities = 77/113 (68%), Positives = 85/113 (75%)
Frame = +3
Query: 264 ARTQKNKATEYHLGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVG 443
ARTQKNKATEYHLG LKAK+AK R+QLLEP K G+GF+V K G RVALIGFPSVG
Sbjct: 15 ARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSTGGGDGFEVTKFGHGRVALIGFPSVG 74
Query: 444 KXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGANIQLLDLPGIIEGAAQGK 602
K EAASYEFTTLTCIPG+I+Y IQLLDLPGIIEGA++GK
Sbjct: 75 KSTLLTMLTGTHSEAASYEFTTLTCIPGIIQYNDTKIQLLDLPGIIEGASEGK 127
>11_08_0079 +
28189782-28189907,28190445-28190553,28190876-28190958,
28191500-28191562,28191658-28192854,28193247-28193310,
28193338-28193426,28194404-28194463,28195442-28195547,
28196057-28196069,28196940-28197111
Length = 693
Score = 41.5 bits (93), Expect = 5e-04
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 408 ARVALIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRG-ANIQLLDLPGIIE 584
A V L+G P+ GK E A Y FTTL G + Y ++++ D+PG+I+
Sbjct: 340 ADVGLVGMPNAGKSTLLSALSRARPEIADYAFTTLRPNIGSLTYEDYFSVKVADIPGLIK 399
Query: 585 GAAQGK 602
GA + +
Sbjct: 400 GAHENR 405
>07_03_1626 +
28223967-28225294,28225506-28225779,28225939-28226230,
28226492-28226651,28226809-28226917,28227004-28227099
Length = 752
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +3
Query: 408 ARVALIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYR-GANIQLLDLPGIIE 584
A V ++G P+ GK A+Y FTTL GV+ A + + DLPG++E
Sbjct: 453 ADVGIVGAPNAGKSTLLTAISAAKPTIANYPFTTLLPNLGVVSLDFDATMVVADLPGLLE 512
Query: 585 GAAQG 599
GA +G
Sbjct: 513 GAHRG 517
>07_01_0075 - 558829-560859
Length = 676
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 405 DARVALI-GFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGANIQLLDLPGII 581
+ R LI G+P+VGK + Y FTT + G +Y+ Q++D PGI+
Sbjct: 167 NTRTLLICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHADYKYLRYQVIDTPGIL 226
Query: 582 E 584
+
Sbjct: 227 D 227
>06_01_0668 - 4882174-4884204
Length = 676
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 405 DARVALI-GFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGANIQLLDLPGII 581
+ R LI G+P+VGK + Y FTT + G +Y+ Q++D PGI+
Sbjct: 167 NTRTLLICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHADYKYLRYQVIDTPGIL 226
Query: 582 E 584
+
Sbjct: 227 D 227
>03_06_0323 +
33121062-33121653,33121748-33121839,33122482-33122565,
33123126-33123203,33123500-33123700,33123821-33123928,
33124145-33124219,33124338-33124537,33124654-33124722,
33125159-33125279,33126840-33127120,33127522-33127594
Length = 657
Score = 35.1 bits (77), Expect = 0.043
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Frame = +3
Query: 408 ARVALIGFPSVGKXXXXXXXXXXXXEAASYEFTTL---------TCIPGVIEYRGANIQL 560
A V L+G P+ GK + A Y FTTL G +++ + L
Sbjct: 277 ADVGLVGLPNAGKSTLLSAITLARPDIADYPFTTLMPNLGRLGGDPALGALQF-SSEATL 335
Query: 561 LDLPGIIEGAAQGK 602
DLPG+IEGA GK
Sbjct: 336 ADLPGLIEGAHLGK 349
>08_01_0387 -
3426058-3426168,3426279-3426473,3426612-3426724,
3427121-3427157,3427270-3427341,3427849-3427962,
3428129-3428200,3428343-3428381,3429340-3429414,
3429561-3429674,3429749-3429813,3429927-3430047,
3430942-3431063,3431547-3431634
Length = 445
Score = 34.7 bits (76), Expect = 0.057
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +3
Query: 414 VALIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGANIQLLDLPGII 581
+ L+G P+VGK E SY FTT + G I Q+ D PG++
Sbjct: 247 LCLVGSPNVGKSSLVRILSSGKPEVCSYPFTTRGILMGHIVSNHERFQVTDTPGLL 302
>10_03_0019 -
7123502-7123673,7124145-7124226,7124228-7124394,
7124569-7125182
Length = 344
Score = 30.7 bits (66), Expect = 0.93
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -2
Query: 393 AHRNLHLCLHLFLKVPATVIYI 328
AHR+LHL LHL L PAT I +
Sbjct: 33 AHRHLHLDLHLPLPPPATAILV 54
>12_02_1203 + 26959225-26959340,26959644-26959776
Length = 82
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = -2
Query: 378 HLCLHLFLKVPATVIYILLIWLLRDPSDI 292
+L LH+ +K P ++Y + W++ D +D+
Sbjct: 44 NLVLHVGVKPPGKIVYFDMPWIIGDATDL 72
>03_01_0607 +
4464669-4465367,4466212-4467369,4468005-4469114,
4469273-4469314,4469496-4469572,4469671-4469755,
4469818-4469901,4469988-4470089,4470181-4470279,
4470794-4470919
Length = 1193
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 462 SIKGSTYPQKESLSKQLEHH 403
++KG+T PQ E + Q++HH
Sbjct: 606 NLKGTTQPQPERVKNQVDHH 625
>01_06_0191 - 27334412-27335155
Length = 247
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = -1
Query: 520 IHVSVVNS*LAASECV*VRVDKRVDLPTEGKPIKATRASPDFSTSKP 380
+ V+V N+ A VDK V LP E +KA A+P ST+KP
Sbjct: 158 VEVTVTNALSAVKPLAVYSVDK-VLLPFELFGVKAPAAAPTASTAKP 203
>10_08_1008 -
22222051-22222377,22222479-22222640,22223179-22223310,
22224556-22224608,22224713-22225256
Length = 405
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -1
Query: 442 PTEGKPIKATRASPDFSTSKPSPLSPPFFEGSSN 341
P E + ++ A P +T P+P++ P EG+S+
Sbjct: 312 PVETRKVEPMSAPPQMATYVPAPVASPPSEGTSS 345
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,029,091
Number of Sequences: 37544
Number of extensions: 238046
Number of successful extensions: 721
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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