Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13m05
(604 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14745-12|AAR25659.1| 366|Caenorhabditis elegans Hypothetical p... 186 1e-47
Z81134-8|CAB57908.1| 366|Caenorhabditis elegans Hypothetical pr... 151 3e-37
AL117202-33|CAB55097.1| 366|Caenorhabditis elegans Hypothetical... 151 3e-37
Z93385-2|CAB07637.1| 358|Caenorhabditis elegans Hypothetical pr... 43 1e-04
AF036706-10|AAM97948.1| 633|Caenorhabditis elegans Hypothetical... 41 8e-04
AF036706-9|AAK39281.1| 681|Caenorhabditis elegans Hypothetical ... 41 8e-04
U13875-6|AAK67213.1| 390|Caenorhabditis elegans Hypothetical pr... 35 0.051
Z93382-12|CAB07620.2| 1238|Caenorhabditis elegans Hypothetical p... 27 7.8
D83665-1|BAA20550.1| 1238|Caenorhabditis elegans copper transpor... 27 7.8
AL032665-3|CAA21773.2| 1238|Caenorhabditis elegans Hypothetical ... 27 7.8
AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf (tbp-asso... 27 7.8
>L14745-12|AAR25659.1| 366|Caenorhabditis elegans Hypothetical
protein C02F5.3 protein.
Length = 366
Score = 186 bits (453), Expect = 1e-47
Identities = 89/113 (78%), Positives = 95/113 (84%)
Frame = +3
Query: 264 ARTQKNKATEYHLGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVG 443
+RTQKNKATEYHLGLLKAKLAKYR QLLEP+ KGG KGEGFDV+KSGDARVA++GFPSVG
Sbjct: 15 SRTQKNKATEYHLGLLKAKLAKYRQQLLEPTGKGGAKGEGFDVMKSGDARVAMVGFPSVG 74
Query: 444 KXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGANIQLLDLPGIIEGAAQGK 602
K EAA YEFTTLTCIPGVI Y GANIQLLDLPGIIEGA+QGK
Sbjct: 75 KSTLLSSMTSTHSEAAGYEFTTLTCIPGVISYNGANIQLLDLPGIIEGASQGK 127
>Z81134-8|CAB57908.1| 366|Caenorhabditis elegans Hypothetical
protein T28D6.6 protein.
Length = 366
Score = 151 bits (367), Expect = 3e-37
Identities = 73/113 (64%), Positives = 81/113 (71%)
Frame = +3
Query: 264 ARTQKNKATEYHLGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVG 443
ARTQKNKAT HLG+LKAKLAK R L+ P GG GEGFDV K+GDAR+ +GFPSVG
Sbjct: 15 ARTQKNKATNAHLGILKAKLAKLRRDLITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVG 74
Query: 444 KXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGANIQLLDLPGIIEGAAQGK 602
K E A+YEFTTLT +PGVI Y+GA IQLLDLPGIIEGA GK
Sbjct: 75 KSTLLCNLAGVFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGK 127
>AL117202-33|CAB55097.1| 366|Caenorhabditis elegans Hypothetical
protein T28D6.6 protein.
Length = 366
Score = 151 bits (367), Expect = 3e-37
Identities = 73/113 (64%), Positives = 81/113 (71%)
Frame = +3
Query: 264 ARTQKNKATEYHLGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVG 443
ARTQKNKAT HLG+LKAKLAK R L+ P GG GEGFDV K+GDAR+ +GFPSVG
Sbjct: 15 ARTQKNKATNAHLGILKAKLAKLRRDLITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVG 74
Query: 444 KXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGANIQLLDLPGIIEGAAQGK 602
K E A+YEFTTLT +PGVI Y+GA IQLLDLPGIIEGA GK
Sbjct: 75 KSTLLCNLAGVFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGK 127
>Z93385-2|CAB07637.1| 358|Caenorhabditis elegans Hypothetical
protein M01E5.2 protein.
Length = 358
Score = 43.2 bits (97), Expect = 1e-04
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Frame = +3
Query: 375 GEGFDVLKSGDARV----ALIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYR 542
GEG +++ + RV L+GFP+ GK + ASY FTTL GV+ Y
Sbjct: 174 GEGEELIYDVEMRVMATAGLVGFPNAGKSSLLRAISRAKPKVASYPFTTLHPHIGVVFYE 233
Query: 543 G-ANIQLLDLPGIIEGAAQGK 602
I + D+PG+IE + K
Sbjct: 234 DFEQIAVADIPGLIEDSHLNK 254
>AF036706-10|AAM97948.1| 633|Caenorhabditis elegans Hypothetical
protein T07A9.9b protein.
Length = 633
Score = 40.7 bits (91), Expect = 8e-04
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +3
Query: 420 LIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGANIQLLDLPGIIE 584
L GFP+VGK E Y FTT G ++YR Q++D PGI++
Sbjct: 174 LCGFPNVGKSSFINNVTRADVEVQPYAFTTKALYVGHLDYRFLRWQVIDTPGILD 228
>AF036706-9|AAK39281.1| 681|Caenorhabditis elegans Hypothetical
protein T07A9.9a protein.
Length = 681
Score = 40.7 bits (91), Expect = 8e-04
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +3
Query: 420 LIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGANIQLLDLPGIIE 584
L GFP+VGK E Y FTT G ++YR Q++D PGI++
Sbjct: 174 LCGFPNVGKSSFINNVTRADVEVQPYAFTTKALYVGHLDYRFLRWQVIDTPGILD 228
>U13875-6|AAK67213.1| 390|Caenorhabditis elegans Hypothetical
protein C26E6.12 protein.
Length = 390
Score = 34.7 bits (76), Expect = 0.051
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Frame = +3
Query: 366 GDKGEGFDVLKSGDAR--VALIGFPSVGKXXXXXXXXXXXX-EAASYEFTTLTCIPGV-- 530
G KG+ FDV R + L+GFP+ GK + A Y FTT+ P V
Sbjct: 146 GSKGDTFDVEIHLKLRPNIGLLGFPNAGKSTLLKALVPEKSVKIADYAFTTVN--PQVAF 203
Query: 531 --------IEYRGANIQLLDLPGIIEGAAQGK 602
+E + + DLPGIIEGA+ +
Sbjct: 204 FKNKEEFSVEDPSFTLSIADLPGIIEGASMNR 235
>Z93382-12|CAB07620.2| 1238|Caenorhabditis elegans Hypothetical
protein Y76A2A.2 protein.
Length = 1238
Score = 27.5 bits (58), Expect = 7.8
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = -2
Query: 435 KESLSKQLEHHQTLAHRNLHLCLHLFLKVPATVIYILLIWLLRDP--SDIQ*LYFSVFSR 262
++ K+L+H + + L VP +I I+ W+LR P D Q F+ +
Sbjct: 399 RDDQMKRLDHSDDVKKWRNTFFIALIFGVPVMIIMIIFHWILRTPMHPDKQTPIFTP-AL 457
Query: 261 FLSQFLIFSLKSP 223
L FL+ L +P
Sbjct: 458 SLDNFLLLCLCTP 470
>D83665-1|BAA20550.1| 1238|Caenorhabditis elegans copper
transporting ATPase protein.
Length = 1238
Score = 27.5 bits (58), Expect = 7.8
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = -2
Query: 435 KESLSKQLEHHQTLAHRNLHLCLHLFLKVPATVIYILLIWLLRDP--SDIQ*LYFSVFSR 262
++ K+L+H + + L VP +I I+ W+LR P D Q F+ +
Sbjct: 399 RDDQMKRLDHSDDVKKWRNTFFIALIFGVPVMIIMIIFHWILRTPMHPDKQTPIFTP-AL 457
Query: 261 FLSQFLIFSLKSP 223
L FL+ L +P
Sbjct: 458 SLDNFLLLCLCTP 470
>AL032665-3|CAA21773.2| 1238|Caenorhabditis elegans Hypothetical
protein Y76A2A.2 protein.
Length = 1238
Score = 27.5 bits (58), Expect = 7.8
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = -2
Query: 435 KESLSKQLEHHQTLAHRNLHLCLHLFLKVPATVIYILLIWLLRDP--SDIQ*LYFSVFSR 262
++ K+L+H + + L VP +I I+ W+LR P D Q F+ +
Sbjct: 399 RDDQMKRLDHSDDVKKWRNTFFIALIFGVPVMIIMIIFHWILRTPMHPDKQTPIFTP-AL 457
Query: 261 FLSQFLIFSLKSP 223
L FL+ L +P
Sbjct: 458 SLDNFLLLCLCTP 470
>AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 2
protein.
Length = 1086
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -1
Query: 442 PTEGKPIKATRASPDFSTSK-PSPLSPP 362
P EG P A +P STS+ P PL PP
Sbjct: 24 PREGAPPPAPPLAPGASTSQAPPPLQPP 51
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,751,768
Number of Sequences: 27780
Number of extensions: 224671
Number of successful extensions: 742
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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