Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13m05
         (604 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   2.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   3.0  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   7.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.3  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   9.3  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 152 N*NKYQSFHTKKLYRFLNF 96
           N N Y +++ KKLY  +N+
Sbjct: 314 NNNNYNNYNNKKLYYNINY 332


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 208 KLAESWGF*RKYQKLRKKSREHRKIKLLNITW 303
           K   SW   R+  +   K+  HRK  LL++ W
Sbjct: 163 KRKRSWSRPREPAQTTSKAGIHRKKVLLSVWW 194


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 208 KLAESWGF*RKYQKLRKKSREHRKIKLLNITW 303
           K   SW   R+  +   K+  HRK  LL + W
Sbjct: 42  KRKRSWSRPRESAQTTSKAGIHRKKVLLLVWW 73


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 489  ASYEFTTLTCIPGVI 533
            A YEF TLT   G I
Sbjct: 1545 AEYEFATLTVTGGTI 1559


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -1

Query: 154 LIKTSINHFILKNYTDS*ILFNAYPKYNYVY*NRLRQ 44
           +I +  N++   NY +    +N Y  YN  Y N  ++
Sbjct: 314 IISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYKK 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,427
Number of Sequences: 438
Number of extensions: 2997
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)