Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13m04
(234 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 26 0.58
SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces pombe... 25 1.3
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos... 22 1.5
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 24 2.3
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 24 2.3
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 23 5.4
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |... 23 7.1
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 23 7.1
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 22 9.4
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo... 22 9.4
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 22 9.4
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 26.2 bits (55), Expect = 0.58
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -1
Query: 189 FXTSIIRDSFQAIHFIRITSKPHIPLVQRRTPSISKRASIMIA*KIIMTPPQS 31
F + RD + F+ KPH LV+ PS+ AS+ + + PQS
Sbjct: 80 FDFDVCRDCYAKQAFLHPCPKPHFVLVRSSIPSV---ASLTCSVNSMSVSPQS 129
>SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 306
Score = 25.0 bits (52), Expect = 1.3
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 49 NYFLGN-HYRRSLTDRWSPALYQRDMRLTGN 138
+YF+G+ H+ S+ +SP L+Q+ ++ GN
Sbjct: 112 DYFVGSVHHVNSIPIDFSPELWQKALQHVGN 142
>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 721
Score = 22.2 bits (45), Expect(2) = 1.5
Identities = 8/15 (53%), Positives = 8/15 (53%), Gaps = 5/15 (33%)
Frame = +1
Query: 19 LPGW-----GLWWCH 48
LP W G WWCH
Sbjct: 215 LPDWIPFHPGKWWCH 229
Score = 21.0 bits (42), Expect(2) = 1.5
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +1
Query: 10 SIGLPGWGLWW 42
+IG P WG +W
Sbjct: 183 AIGCPHWGKFW 193
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 24.2 bits (50), Expect = 2.3
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 234 FLYIQHIY*ILTR*YFXTSIIRDSF-QAIHFIRITSKPHIPLVQR 103
FL HI+ + + YF S DSF + +R S P++ +++
Sbjct: 318 FLISDHIFSEIQKVYFLPSSQNDSFDDVVACLRQKSTPYLSFIKK 362
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 24.2 bits (50), Expect = 2.3
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 79 SVYNDCLENNYDTTT 35
S+Y+ L NNYD+TT
Sbjct: 311 SLYSQRLSNNYDSTT 325
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 23.0 bits (47), Expect = 5.4
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +1
Query: 46 HNYFLGNHYRRSLTDRWSPA---LYQRDMRLTGNPYEVNGLE 162
+NY + + L D + P L+ LTGN YE+N L+
Sbjct: 66 YNYAVDYVNNKLLMDVYPPLGKLLFSLVAALTGNKYELNTLD 107
>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 70 NDCLENNYDTTTVPNPAIQLKL 5
N C+E+ ++ T VPN Q +L
Sbjct: 181 NACVEHEFEITIVPNVQQQPEL 202
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 22.6 bits (46), Expect = 7.1
Identities = 13/42 (30%), Positives = 16/42 (38%)
Frame = -3
Query: 136 YQ*ASYPSGTTQDSIYQ*ASVYNDCLENNYDTTTVPNPAIQL 11
Y+ + Y T S+ ND NN T P PA L
Sbjct: 345 YELSQYDVVLTTYSMLAYEMKQNDAFNNNNPATATPPPACSL 386
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 22.2 bits (45), Expect = 9.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 61 GNHYRRSLTDRWSPALYQRDMRLTGNPYEVN 153
GNH+R + + +SP+ R G+ EVN
Sbjct: 65 GNHFRPASSLSFSPSSLSRKDSGPGDGLEVN 95
>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 400
Score = 22.2 bits (45), Expect = 9.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 97 SIYQ*ASVYNDCLENNYDTTTVPNPAIQLKL 5
SI + + N C+E NY + T+ A+ +L
Sbjct: 141 SILELPELMNACIERNYFSETLEFQALAYRL 171
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 132 SKPHIPLVQRRTPS 91
S PH P + +RTPS
Sbjct: 165 SVPHSPAMHKRTPS 178
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 959,164
Number of Sequences: 5004
Number of extensions: 16188
Number of successful extensions: 31
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 57
effective length of database: 2,077,250
effective search space used: 41545000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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