Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13m04
         (234 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0245 + 2023442-2023786,2024485-2024841,2024951-2025393,202...    27   1.6  
06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804     27   2.1  
05_02_0007 - 5547004-5547275,5547375-5547403,5550481-5550938           27   2.8  
04_01_0122 + 1267048-1267149,1267764-1267855,1268137-1268234,126...    26   4.9  

>08_01_0245 +
           2023442-2023786,2024485-2024841,2024951-2025393,
           2025475-2025569,2026302-2026477
          Length = 471

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 178 NYPG*LPSHSLHKDYQ*ASYPSGTTQDSI 92
           +YPG  P HS  KD   A Y S T Q+++
Sbjct: 384 DYPGVGPEHSFLKDIGRAEYDSVTDQEAL 412


>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
          Length = 1209

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 94   WSPALYQRDMRLTGNPYE 147
            ++PA+YQRD R  G  YE
Sbjct: 1072 FAPAIYQRDARCRGGAYE 1089


>05_02_0007 - 5547004-5547275,5547375-5547403,5550481-5550938
          Length = 252

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 49  NYFLGNHYRRSLTDRWSPAL-YQRDMRLTGNPYEV 150
           +Y LG HYRR        A+ Y   ++L GN  E+
Sbjct: 97  HYMLGEHYRRDFAVVVDEAVAYAETLKLAGNGKEI 131


>04_01_0122 +
           1267048-1267149,1267764-1267855,1268137-1268234,
           1268333-1268488,1268736-1269355,1269480-1269547,
           1269848-1270099,1270390-1270525,1271054-1271246,
           1271386-1271939
          Length = 756

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 76  RSLTDRWSPALYQRDMRLTGNPYEVNGL 159
           +SL   WSPA  +  +  T N ++ NG+
Sbjct: 554 KSLHPEWSPAALKSAIMTTANTFDNNGM 581


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,017,082
Number of Sequences: 37544
Number of extensions: 96851
Number of successful extensions: 202
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 14,793,348
effective HSP length: 56
effective length of database: 12,690,884
effective search space used: 266508564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)