Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13m04
         (234 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical pr...    27   1.8  
AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear recep...    27   1.8  
AY519853-1|AAR89634.1|  545|Caenorhabditis elegans acetylcholine...    25   9.5  
AF067943-10|AAC17666.3|  545|Caenorhabditis elegans Acetylcholin...    25   9.5  

>Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical
           protein ZK662.3b protein.
          Length = 817

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 163 LPSHSLHKDYQ*ASYPSGTTQDSIYQ*ASVYND 65
           LP  SLH+++Q   Y + T    +    S+YND
Sbjct: 19  LPPQSLHQNWQDTEYVNTTCSSDMNSDMSMYND 51


>Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical
           protein ZK662.3a protein.
          Length = 780

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 163 LPSHSLHKDYQ*ASYPSGTTQDSIYQ*ASVYND 65
           LP  SLH+++Q   Y + T    +    S+YND
Sbjct: 19  LPPQSLHQNWQDTEYVNTTCSSDMNSDMSMYND 51


>AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 817

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 163 LPSHSLHKDYQ*ASYPSGTTQDSIYQ*ASVYND 65
           LP  SLH+++Q   Y + T    +    S+YND
Sbjct: 19  LPPQSLHQNWQDTEYVNTTCSSDMNSDMSMYND 51


>AY519853-1|AAR89634.1|  545|Caenorhabditis elegans acetylcholine
           receptor (62.5 kD)(acr-23) protein.
          Length = 545

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 13  IGLPGWGLWWCHNYFL 60
           I L GW +W+  N+FL
Sbjct: 529 INLYGWYIWYTENHFL 544


>AF067943-10|AAC17666.3|  545|Caenorhabditis elegans Acetylcholine
           receptor protein 23 protein.
          Length = 545

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 13  IGLPGWGLWWCHNYFL 60
           I L GW +W+  N+FL
Sbjct: 529 INLYGWYIWYTENHFL 544


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,212,999
Number of Sequences: 27780
Number of extensions: 89428
Number of successful extensions: 182
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 12,740,198
effective HSP length: 57
effective length of database: 11,156,738
effective search space used: 223134760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)