Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13m04
         (234 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   2.6  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   2.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   2.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   2.6  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   2.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    20   3.5  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    19   6.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    19   8.0  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 2.6
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = -2

Query: 176 LSGIASKPFTS*GLPVSLISLW 111
           + G++ KP +  G  + +I++W
Sbjct: 155 VKGLSGKPLSINGALIRIIAIW 176


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 2.6
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = -2

Query: 176 LSGIASKPFTS*GLPVSLISLW 111
           + G++ KP +  G  + +I++W
Sbjct: 121 VKGLSGKPLSINGALIRIIAIW 142


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 2.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 4   TASIGLPGWGLWWCHNYFL 60
           +A + LPG  +W C  +F+
Sbjct: 365 SAVLELPGSSIWSCLFFFM 383


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 2.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 4   TASIGLPGWGLWWCHNYFL 60
           +A + LPG  +W C  +F+
Sbjct: 418 SAVLELPGSSIWSCLFFFM 436


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 20.6 bits (41), Expect = 2.6
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = -2

Query: 176 LSGIASKPFTS*GLPVSLISLW 111
           + G++ KP +  G  + +I++W
Sbjct: 31  VKGLSGKPLSINGALIRIIAIW 52


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.2 bits (40), Expect = 3.5
 Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 113 WYNAGLHLSVSERL-**LPRK*L*HHHSPQPGNPI 12
           W++   H+SV+++L   +P   +   ++  PGNP+
Sbjct: 156 WHSPEAHISVAQKLQKEIPNSIILDQYT-NPGNPL 189


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 19.4 bits (38), Expect = 6.0
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +1

Query: 64  NHYRRSLTDRWS 99
           +HYRR+  DR++
Sbjct: 133 SHYRRTRRDRYT 144


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 51  IMTPPQSPTRQSN*SCN 1
           I  PP +P  + N  CN
Sbjct: 463 IRVPPGTPIYECNKRCN 479


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,515
Number of Sequences: 438
Number of extensions: 1350
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  3772710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)