Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13m01
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe...    27   3.6  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    25   8.4  
SPBC4B4.11 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.4  

>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 392 DKNFNVIRFYR*TFLAHFILNIVEYYLFVEFIL 490
           +KN+ +I         HFILN++ +  F E++L
Sbjct: 135 NKNWTIISIIEIPIKLHFILNVLLFLKFSEYML 167


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +2

Query: 170 LERIKHNSRISVMSPNSPDYSHPEFGDSTVDAYLVEPGIRRLHCP 304
           L  +++ S+ S M+ +S D+S  EFG +   AY +E  I  L  P
Sbjct: 466 LHSLRNLSKTSGMN-HSADFSLHEFGQADPFAYEIEKPIASLPLP 509


>SPBC4B4.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 113

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 270 RYASTVESPNSGCE*SGEF 214
           RYASTV SP SG   + +F
Sbjct: 21  RYASTVPSPRSGISNTNDF 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,966,643
Number of Sequences: 5004
Number of extensions: 60174
Number of successful extensions: 148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)