Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13m01
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0005 - 10112657-10113745,10113903-10114066,10116465-10117041     31   0.71 
11_01_0404 + 3071412-3071464,3073572-3074970                           30   2.2  
06_01_0733 + 5405889-5405922,5405923-5405975,5406430-5406543,540...    28   8.7  

>01_02_0005 - 10112657-10113745,10113903-10114066,10116465-10117041
          Length = 609

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = -2

Query: 403 EIFVSTKTAMFCGQMTSQWHEFLVDVSFPKFRLWTVQSPNSGFNKICVNC*VAEFRV*IV 224
           +I + ++T +F  QM   W + L    + +FRLW  +  + G   I        +   + 
Sbjct: 198 KIQLDSETHLFLYQMVGTWGQLLFPKPWKEFRLWYDEHKSKGIKPILEGMKTTGWYKKMG 257

Query: 223 RRVWT 209
            R+WT
Sbjct: 258 ERIWT 262


>11_01_0404 + 3071412-3071464,3073572-3074970
          Length = 483

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/67 (23%), Positives = 32/67 (47%)
 Frame = -1

Query: 215 LDS*QIFYYYVLFFLTHLKLYLMNGPSLSHTLQLHVRCRENXXXXXXXXXXRTVDSPNSG 36
           L+S  +FY  +  +  + ++ L   P+L  +LQL +RC+E+            +D   S 
Sbjct: 271 LNSKHLFYEEMCSYHNNNRISLPEDPALQQSLQLALRCKEDNDFMRHASGDAELDDDQSE 330

Query: 35  CSSWRQS 15
            S + ++
Sbjct: 331 DSDYEEN 337


>06_01_0733 +
           5405889-5405922,5405923-5405975,5406430-5406543,
           5407464-5407523,5408139-5408217,5410661-5410728,
           5411198-5411302,5411887-5411994,5412087-5412279,
           5412818-5412897,5413309-5413536,5414112-5414252,
           5414341-5414466,5414561-5414611,5414879-5414956,
           5415814-5415960,5416685-5417179
          Length = 719

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -3

Query: 300 QCNRRIPGSTRYASTVESPNSGCE*SGEFGLITDILLLCFI-LSNTFKTVPNEWT 139
           Q  R I   T    T++  +   E  G+FGLI  ++L  F+     FK+ P E T
Sbjct: 231 QLRRSIRTGTPIEDTMQKKHHLLETKGDFGLIALLVLRGFVGFGEKFKSSPKEET 285


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,612,386
Number of Sequences: 37544
Number of extensions: 332150
Number of successful extensions: 625
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)