Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13l24
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    33   0.054
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.2  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    28   1.5  
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c...    27   2.0  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   3.6  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    27   3.6  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    26   6.2  

>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 32.7 bits (71), Expect = 0.054
 Identities = 19/96 (19%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
 Frame = +3

Query: 123 IHNFSIQGTKHFSNGNETRRVVISEDVSEMIPDFFFKHNSHRKLTTN---YTNHRKPNLK 293
           +++ S      +S+  ++  V+  ED ++++   +FKHN+          Y  H+ P+++
Sbjct: 61  VNDSSTDSLIRWSDRGDSFLVIGHEDFAKLVLPRYFKHNNFSSFVRQLNMYGFHKVPHIQ 120

Query: 294 SNVFDKMLSDEMLSMKQQSHEKDMTYSPSILTWNKA 401
             V      +E+L     + ++D      ++T  KA
Sbjct: 121 QGVLQSDSPNELLEFANPNFQRDQPELLCLVTRKKA 156


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = +3

Query: 162  NGNETRRVVISEDVSEMIPDFFFKHNSHRKLTTNYTNHRKPNLKSNVFDKMLSDEMLSMK 341
            NGNE   V+  E +     +F    N  + L  N T++RKP    N   K+  +      
Sbjct: 891  NGNEVPAVLPPELIPPSTRNFTESLNQVKNLIKNDTSNRKPFGAENQ-SKLKKNSFYDNP 949

Query: 342  QQSHEKDMT 368
             ++ EKD T
Sbjct: 950  SETTEKDAT 958


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = +3

Query: 252 LTTNYTNHRKPNLKSNVFDKMLSDEMLSMKQQSHEKDMTYSPS 380
           +  NY NH  PN++ +  + ++             K +TY PS
Sbjct: 253 MNPNYVNHSLPNVRPHTLESVMPHNCTKNAMDLLHKMLTYVPS 295


>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
           complex subunit Rrn5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 556

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 186 VISEDVSEMI-PDFFFKHNSHRKLTTNYTNHRKPNLKSNVFDKMLSDEML 332
           +I   + E+I    F   +  RKL  N   HRKP +K+   D +LS + L
Sbjct: 229 IIKSKLKELIGTSIFLAESRFRKLEANNAFHRKPIIKNR--DVVLSGKFL 276


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 17/73 (23%), Positives = 31/73 (42%)
 Frame = +3

Query: 168 NETRRVVISEDVSEMIPDFFFKHNSHRKLTTNYTNHRKPNLKSNVFDKMLSDEMLSMKQQ 347
           N T ++V  + + E++P  FF  N      T   N  + NL+ + F       + S    
Sbjct: 782 NSTAQLVSPDSIQELVPSTFFSSN------TKKDNIEEENLEPHSFS--FDSTLASSSDN 833

Query: 348 SHEKDMTYSPSIL 386
             ++D   + SI+
Sbjct: 834 DEQRDFASNSSIV 846


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/42 (23%), Positives = 25/42 (59%)
 Frame = +3

Query: 102 FTIFLIEIHNFSIQGTKHFSNGNETRRVVISEDVSEMIPDFF 227
           +++ ++ I   +I+G+ +F N   +  + +++ +SE  P FF
Sbjct: 368 YSLNMLSIEMENIEGSLYFGNAQLSNLICVNQYLSEQRPVFF 409


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
 Frame = +3

Query: 99  VFTIFLIEIHNFSIQGTKHFSNGNETRRVVISEDVSEMIPDFFFKHNSHRKLTTNYT-NH 275
           V+T F+ E++++  +   H S GN   R      +  ++        S    + NY+ +H
Sbjct: 94  VWTKFISEVNSYDKEKENHLSTGNHELRRTTPLKIGPLLLTRIGLLKSKNTASNNYSVDH 153

Query: 276 RKPNLKSNVFDKMLSDEMLSMKQQSHEKDMTYSP 377
              NL ++  + +L+ ++ + +  SH + +   P
Sbjct: 154 IVSNLAND--NTLLNRQVSTEEWNSHLRHLLNIP 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,939,145
Number of Sequences: 5004
Number of extensions: 61244
Number of successful extensions: 197
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)