Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13l22
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0928 - 7159857-7159922,7159923-7160024,7160126-7160206,716... 42 3e-04
11_06_0707 + 26467214-26470309 33 0.16
11_06_0698 + 26385989-26389090 32 0.36
11_06_0696 + 26358713-26359779,26359826-26360110,26360177-263603... 32 0.36
06_03_1193 - 28298656-28298754,28299303-28299377,28299456-282995... 32 0.48
07_01_0622 - 4625246-4627759 30 1.5
04_03_0911 + 20767041-20767047,20767119-20769322 29 4.4
06_01_0591 + 4261483-4261631,4261837-4262007,4262127-4262226,426... 28 7.7
>06_01_0928 -
7159857-7159922,7159923-7160024,7160126-7160206,
7160289-7160384,7160462-7160566,7160648-7160722,
7161372-7161431,7161960-7162090,7162175-7162250,
7163390-7163459,7163603-7163664,7163788-7163871,
7163973-7164047,7164448-7164585,7164733-7164791,
7164910-7165123,7167996-7168091,7168701-7169639
Length = 842
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +2
Query: 491 LNIMNNELTDKSVLHLSKYAQFIK-LKYLRLNGNDIGTKGGEYFADFLENNTSLERCDIG 667
L+I NN +T + LH++++ + K L +L L NDI +G E AD L+ N ++ D+G
Sbjct: 610 LDIGNNNITSEGSLHVAEFIKRTKSLLWLSLYMNDISDEGAEKVADALKQNKTISTVDLG 669
>11_06_0707 + 26467214-26470309
Length = 1031
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/40 (45%), Positives = 20/40 (50%)
Frame = +2
Query: 521 KSVLHLSKYAQFIKLKYLRLNGNDIGTKGGEYFADFLENN 640
KS +HL Q LKYLR+NG TK G F E N
Sbjct: 793 KSCVHLPPIGQLPNLKYLRINGASAITKIGPEFVGCWEGN 832
>11_06_0698 + 26385989-26389090
Length = 1033
Score = 32.3 bits (70), Expect = 0.36
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +2
Query: 521 KSVLHLSKYAQFIKLKYLRLNGNDIGTKGGEYFADFLENN 640
KS +HL Q LKYL++NG TK G F E N
Sbjct: 793 KSCVHLPPIGQLPNLKYLKINGASAITKIGPEFVGCWEGN 832
>11_06_0696 +
26358713-26359779,26359826-26360110,26360177-26360356,
26360516-26360585,26361051-26361950
Length = 833
Score = 32.3 bits (70), Expect = 0.36
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +2
Query: 521 KSVLHLSKYAQFIKLKYLRLNGNDIGTKGGEYFADFLENN 640
KS +HL Q LKYL++NG TK G F E N
Sbjct: 594 KSCVHLPPIGQLPNLKYLKINGASAITKIGPEFVGCWEGN 633
>06_03_1193 -
28298656-28298754,28299303-28299377,28299456-28299544,
28299679-28299760,28300385-28300474,28300557-28300655,
28300733-28300852,28300968-28301084,28301174-28301309,
28301415-28301584,28301744-28301947,28302032-28302157,
28302841-28303101,28303215-28303229
Length = 560
Score = 31.9 bits (69), Expect = 0.48
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +2
Query: 182 NILKKITGTPAPLDKREINEIRLNLFTERNSDGTGSLVLRG 304
N++ ++ GT ++R++ R N+F+ S T ++VLRG
Sbjct: 339 NVIDEVLGTCEVFEERQVGNERFNIFSGCPSGQTATIVLRG 379
>07_01_0622 - 4625246-4627759
Length = 837
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 344 SL*SFCCIFEKCHSLSIPNCPCRQSFSP 261
SL C F C+ S+P C C +SFSP
Sbjct: 329 SLHDVCGPFTVCNGNSVPFCGCMESFSP 356
>04_03_0911 + 20767041-20767047,20767119-20769322
Length = 736
Score = 28.7 bits (61), Expect = 4.4
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 335 SFCCIFEKCHSLSIPNCPCRQSFS 264
+FC F C+ ++ P+C C + FS
Sbjct: 241 AFCGPFTVCNDITFPSCTCMKGFS 264
>06_01_0591 +
4261483-4261631,4261837-4262007,4262127-4262226,
4263151-4263315,4263416-4263544,4263758-4263858,
4264527-4264596,4265080-4265331,4265828-4265897,
4266281-4266341,4266916-4267003,4267746-4267830,
4268168-4268234,4268442-4268559,4268843-4268923,
4269022-4269267,4269670-4269771,4269847-4269914,
4270040-4270171,4270283-4270430,4270504-4270790,
4270920-4271067,4271156-4271331,4271407-4271518,
4271614-4271667,4273134-4273244,4273317-4273478,
4273627-4273814,4273948-4274137,4274297-4274464,
4274832-4274912
Length = 1359
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = -1
Query: 669 WPISHRSKLVLFSRKSAKYSPPFVPISFPFNLKYLSLINCAYFDKCNTDLSVNSLFIILR 490
W I+ V+ SR+ +KY +S P ++ CNT+ +VN++ +ILR
Sbjct: 562 WVINGMIDAVISSRRLSKY------LSSPEKRSSAIPVSADLLKHCNTETNVNAMAVILR 615
Query: 489 S 487
+
Sbjct: 616 N 616
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,449,515
Number of Sequences: 37544
Number of extensions: 286144
Number of successful extensions: 634
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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