Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13l18
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    27   2.6  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   3.4  
SPAC19G12.04 |||ureidoglycolate hydrolase |Schizosaccharomyces p...    27   3.4  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   4.5  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   4.5  
SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...    25   7.9  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    25   7.9  

>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = -2

Query: 247 PRSLPNLGWNLNIALVVKCSRVSSRICTDYISSEIQNYYESNFLKKLT 104
           P SL  L W++  A V    RVS  I  + +SS++ + + +N LK L+
Sbjct: 752 PDSLSGLYWSVKSAGVRASRRVSRNIEGESVSSDLDDIF-ANVLKGLS 798


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +3

Query: 540 MALTLIMIYGAARGKPAYLLPFFCLQIFDFAITILTATGYL 662
           + L+L+ IY AA   P Y+      ++F+F++ ++ ++  L
Sbjct: 499 LTLSLMSIYVAAEENPLYVASSIFSKLFNFSLDLIKSSSKL 539


>SPAC19G12.04 |||ureidoglycolate hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 191

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = -3

Query: 396 THGPVHPAIEDHAQSLLKLLVPLGAGTGAMIPG*LCQSEHVGRSSIATHCHVHFPTWD 223
           TH  VHPA ++HA   + +L      T   IP      E     ++A +     P W+
Sbjct: 70  THPSVHPANDEHAAFQISVLERHPFTTQTFIPMCRSSDEQAYLIAVAPNAPDGMPDWN 127


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 393 HGPVHPAIEDHAQSLLKLLV 334
           H P HP +ED AQ L KL V
Sbjct: 122 HDPDHPTLEDVAQMLGKLKV 141


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +3

Query: 351 AIVRDPRLLDELDRESSPVSSWSNVG 428
           A V D    DELD+ SSP SS S+ G
Sbjct: 679 ATVEDDSPFDELDKFSSPFSSSSSRG 704


>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
 Frame = +3

Query: 324 HLVALGVLAAIVRDPRLLDELDRESSPVSS---WSNVGRTGDVLPTPLSNVETRPSPYSQ 494
           HLV  GV        ++  E++ E  P      +   G+  D LP P  NVE   +  S 
Sbjct: 115 HLV--GVTHTADEAKQMASEVEYEDGPDDEGNMFKRPGKLSDFLPPPYPNVEAARA--SN 170

Query: 495 HASHPSDHSLIYLG 536
           + + P D S +  G
Sbjct: 171 NGAAPPDLSCVVRG 184


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = -3

Query: 411 NSLGMTHGPVHPAIEDHAQSLLKLLVPLGAGTGAMIPG*LCQSEHVGRSSIATHCHV 241
           N+  +T+ P HP          K+LV         +    C + H+ R   A+HCH+
Sbjct: 146 NAYSLTYNPAHPWSVIPEDR--KVLVGSTRSDSVFVNTVYCHTCHLYRPPRASHCHL 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,062,316
Number of Sequences: 5004
Number of extensions: 66695
Number of successful extensions: 195
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)