Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13l18
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0460 + 9567656-9567766,9567849-9567949,9568527-9568647,956...    32   0.50 
02_01_0356 + 2563773-2563898,2564031-2564131,2564375-2564498,256...    30   1.5  
05_04_0272 + 19624898-19625071,19625909-19626370,19626471-196269...    29   4.6  
12_02_0267 - 16588799-16588826,16589333-16590144                       28   6.1  

>09_02_0460 + 9567656-9567766,9567849-9567949,9568527-9568647,
            9568733-9568792,9569022-9569089,9569469-9569535,
            9569586-9569666,9570152-9570217,9570372-9570410,
            9570527-9570609,9570712-9570823,9570902-9570982,
            9571132-9571290,9571397-9571504,9571570-9571674,
            9571765-9571905,9572007-9572147,9572205-9572426,
            9573617-9573730,9573830-9574045,9574373-9574432,
            9574513-9574626,9574735-9574820,9574904-9575012,
            9575099-9575277,9575357-9575429
          Length = 938

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
 Frame = +3

Query: 270  CLHVRTGTIILGSWHLFLHLVALGVLAAIVRDPRLLDELDRESSPVSSWSNVGRTGDVL- 446
            CL +++  IILG +H  L+++AL +       PR+L  +D +  P+S    VG+  DV+ 
Sbjct: 832  CLDMKS--IILGKYHYMLYILALAM------QPRMLLTVDEDLKPLSVPVCVGQAVDVVG 883

Query: 447  ----PTPLSNVETRPSP 485
                P  ++  +T  +P
Sbjct: 884  QAGRPKTITGFQTHSTP 900


>02_01_0356 +
           2563773-2563898,2564031-2564131,2564375-2564498,
           2564592-2564651,2564762-2564829,2565520-2565562,
           2566026-2566091,2566237-2566275,2566375-2566457,
           2566654-2566765,2566840-2566923,2567026-2567184,
           2567268-2567372,2567451-2567555,2567661-2567801,
           2567920-2568024,2568111-2568335,2568762-2568875,
           2568963-2569178,2569674-2569733,2569827-2569940,
           2570047-2570132,2570211-2570319,2570408-2570586,
           2570673-2570741,2570792-2571005
          Length = 968

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
 Frame = +3

Query: 270 CLHVRTGTIILGSWHLFLHLVALGVLAAIVRDPRLLDELDRESSPVSSWSNVGRTGDVL- 446
           CL +++   ILG +H  L+++ L +       PR+L  +D +  P+S    VG+  DV+ 
Sbjct: 792 CLDMKS--TILGKYHYILYIIVLAM------QPRMLLTVDEDLKPLSVPVRVGQAVDVVG 843

Query: 447 ----PTPLSNVETRPSP 485
               P  ++  +T  +P
Sbjct: 844 QAGRPKTITGFQTHSTP 860


>05_04_0272 +
           19624898-19625071,19625909-19626370,19626471-19626905,
           19626992-19627237,19627318-19628085,19628245-19628417,
           19629337-19629440,19629525-19630127,19630210-19630214
          Length = 989

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 375 LDELDRESSPVSSWSNV-GRTGDVLPTPLSNVETRP 479
           +D L     P+SS+S + G   D LP+P SNV  RP
Sbjct: 855 VDTLPSTIRPLSSYSLLDGSLDDGLPSPASNVSFRP 890


>12_02_0267 - 16588799-16588826,16589333-16590144
          Length = 279

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
 Frame = +3

Query: 336 LGVLAAIVRDPRLLDELDRESSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSD 515
           L V   I  +PR +DE+D + SPV         G  +P  +           +   HP  
Sbjct: 137 LDVDECISSNPRQIDEIDDDISPVLCGEANSLVGINVPCEVITQLLMEDMEGESGQHPKV 196

Query: 516 HSLIYLGTM--ALTLIMIYGAARGK 584
            S++ LG +  +   I +Y    G+
Sbjct: 197 LSIVGLGGLGKSTLAIQVYNKIHGR 221


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,450,508
Number of Sequences: 37544
Number of extensions: 471678
Number of successful extensions: 1300
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)