Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13l10
         (471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    28   0.83 
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   7.7  
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    25   7.7  

>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 176 RNKRFNRISTCSIREQGYQKNIGTKFSC 259
           ++ + NR+  C+    GY  N G KF+C
Sbjct: 136 KSMQTNRLPGCTAESWGYHGNSGEKFNC 163


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -3

Query: 178 SLAFNPKRLSMPLFA-PMSDEK--NAR*IS*FLFNVKFTHKVTKNLEKVK 38
           SL  N   ++ P F  P SD+   N R I+ FLF  KF++  T  L  +K
Sbjct: 183 SLRPNSSFVNSPFFPLPSSDDLFLNDRVINLFLFYEKFSYLFTHLLSAIK 232


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -2

Query: 380 IHWDCSNTDTFSELAINSPYNILMW 306
           + W  ++ +TFS L +  P  +L++
Sbjct: 564 VEWPLTHGETFSRLGVRPPKGVLLY 588


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,646,411
Number of Sequences: 5004
Number of extensions: 30485
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)