Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13l03
         (395 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034393-8|CAA22313.1|  241|Caenorhabditis elegans Hypothetical ...    31   0.30 
AF022983-5|AAK82915.1|   79|Caenorhabditis elegans Hypothetical ...    29   1.2  
U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U41028-3|AAA82356.2|  159|Caenorhabditis elegans Hypothetical pr...    28   2.8  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    27   3.7  
U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical p...    27   4.9  
U80453-11|AAN63452.2|  503|Caenorhabditis elegans Hypothetical p...    27   6.4  
U80453-10|AAN63453.1|  489|Caenorhabditis elegans Hypothetical p...    27   6.4  
U80453-9|AAT81206.1|  432|Caenorhabditis elegans Hypothetical pr...    27   6.4  
U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical pr...    27   6.4  
AC024750-3|AAF60440.1|  384|Caenorhabditis elegans Hypothetical ...    27   6.4  
AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical ...    26   8.5  

>AL034393-8|CAA22313.1|  241|Caenorhabditis elegans Hypothetical
           protein Y18D10A.10 protein.
          Length = 241

 Score = 31.1 bits (67), Expect = 0.30
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -1

Query: 113 GHVRRGE-HHHGPQPRPRVAPTDRPSHMTQPEC 18
           GH   G  HHHG  PRPR     RP    +PEC
Sbjct: 45  GHHGHGHGHHHGRPPRPR---PPRPPVSREPEC 74


>AF022983-5|AAK82915.1|   79|Caenorhabditis elegans Hypothetical
           protein R13D11.10 protein.
          Length = 79

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 13  RRHSGWVMWDGRSVGATRGRGWGPW 87
           R + G+  W GR +G   GRG G W
Sbjct: 51  RPYGGYGGWGGRGMGGWGGRGMGGW 75


>U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical
           protein T26A5.5a protein.
          Length = 1076

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 101 RGEHHHGPQPRPRVAPTDRPSHMTQPE 21
           R + H   +P P  APT  PSH  +P+
Sbjct: 857 RNKEHKEYRPSPNAAPTPSPSHHQKPK 883


>U41028-3|AAA82356.2|  159|Caenorhabditis elegans Hypothetical
           protein C25G6.4 protein.
          Length = 159

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 130 HPWQPARQPKFTSQYNGLRVNCSFVLTVNASTTGVTRTKGESRSGGW 270
           H  +   Q +F  Q    RVN +F +  +AS+TG + T+  S   G+
Sbjct: 95  HSREHVNQSEFDKQEQEFRVNRNFRVAADASSTGPSYTQKHSWIDGF 141


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 107  VRRGEHHHGPQPRPRVAPTDRPSHMTQPE 21
            V+R +    PQPRP+  P  +P    QP+
Sbjct: 2026 VQRPQFRPQPQPRPQPQPQPQPQPQPQPQ 2054


>U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical
           protein F26A1.12 protein.
          Length = 231

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -1

Query: 101 RGEHH-HGPQPRPRVAPTDRPSHMTQP 24
           RG HH HGP+P PR     RP   T P
Sbjct: 40  RGHHHKHGPRP-PRPNRPPRPPPATPP 65


>U80453-11|AAN63452.2|  503|Caenorhabditis elegans Hypothetical
           protein C23H3.9a protein.
          Length = 503

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 15/52 (28%), Positives = 20/52 (38%)
 Frame = +1

Query: 82  PWWCSPRRTWPAHAQRHPWQPARQPKFTSQYNGLRVNCSFVLTVNASTTGVT 237
           PW+   R  WP +  R   + A Q   T+Q            T  A+TT  T
Sbjct: 173 PWYIKDRTAWPTY-NRISAEKALQKTSTTQETTTSTTAQPTTTTTATTTTTT 223


>U80453-10|AAN63453.1|  489|Caenorhabditis elegans Hypothetical
           protein C23H3.9b protein.
          Length = 489

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 15/52 (28%), Positives = 20/52 (38%)
 Frame = +1

Query: 82  PWWCSPRRTWPAHAQRHPWQPARQPKFTSQYNGLRVNCSFVLTVNASTTGVT 237
           PW+   R  WP +  R   + A Q   T+Q            T  A+TT  T
Sbjct: 169 PWYIKDRTAWPTY-NRISAEKALQKTSTTQETTTSTTAQPTTTTTATTTTTT 219


>U80453-9|AAT81206.1|  432|Caenorhabditis elegans Hypothetical
           protein C23H3.9d protein.
          Length = 432

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 15/52 (28%), Positives = 20/52 (38%)
 Frame = +1

Query: 82  PWWCSPRRTWPAHAQRHPWQPARQPKFTSQYNGLRVNCSFVLTVNASTTGVT 237
           PW+   R  WP +  R   + A Q   T+Q            T  A+TT  T
Sbjct: 112 PWYIKDRTAWPTY-NRISAEKALQKTSTTQETTTSTTAQPTTTTTATTTTTT 162


>U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical
           protein R07E4.5 protein.
          Length = 817

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -1

Query: 77  QPRPRVAPTDRPSHMTQP 24
           QPRPR A + R  H TQP
Sbjct: 751 QPRPRKAVSSRRHHYTQP 768


>AC024750-3|AAF60440.1|  384|Caenorhabditis elegans Hypothetical
           protein Y17G9A.4 protein.
          Length = 384

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
 Frame = +1

Query: 49  SVGATRGRGWGP-WWCSPRRTWP 114
           S  +  GRGWGP WW      +P
Sbjct: 345 SANSFNGRGWGPGWWNKCLEVYP 367


>AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical
           protein R193.2 protein.
          Length = 1853

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 122 PSATPGNPRANPSLPASIMVCV*TAPL 202
           P   P NP  +PS+P S M    TAP+
Sbjct: 148 PPTQPVNPSVSPSVPPSNMPPTTTAPM 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,373,265
Number of Sequences: 27780
Number of extensions: 92205
Number of successful extensions: 463
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)