Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13k24
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces p...   116   4e-27
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    29   0.59 
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       27   1.8  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   1.8  
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    27   3.1  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   3.1  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   7.3  

>SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score =  116 bits (278), Expect = 4e-27
 Identities = 53/103 (51%), Positives = 73/103 (70%)
 Frame = +2

Query: 341 LNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTHSSALIVCGPGNNGGD 520
           L+ S A ALD +L +   FS+DQLMELAGLSV+ A+ + +PPS +S  LI CGPGNNGGD
Sbjct: 6   LSASAAKALDAELMSAGAFSIDQLMELAGLSVSQAVYREYPPSQYSQVLICCGPGNNGGD 65

Query: 521 GLVAARHMQLFGYNVSVHYPKRTPKPLYENLLEQCIRFNVNII 649
           GLVAARH+  +GY  +V+YPK +   LY+ L +Q    ++ ++
Sbjct: 66  GLVAARHLWQYGYKPTVYYPKPSSPELYKRLCKQLDDLDIPVV 108


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 229 LRRFFYCFSFTN-NRYVVWFQMSVKIIFYLNPMCML 125
           +R   + FSF N N Y+VWF+  +     L P C++
Sbjct: 56  VRECLFLFSFQNDNEYLVWFKKHLNERLQLCPKCIV 91


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -3

Query: 297 VPMLYSFATRNIRALPNNLYNNI 229
           +P+L S AT NIR  P++ YNNI
Sbjct: 96  IPILNS-ATSNIRLTPSDTYNNI 117


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 365 VLPLLTD*GTASQCCIDSYCSS*FRCYT 282
           VLP LT+ G  S  C    C S ++CY+
Sbjct: 394 VLPFLTNGGCYSYICRSRSCPSKYQCYS 421


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 256 CSNIACSKTV*HRNYDEQYESMQHCDAVPQ 345
           C+ I+C     +  Y  QY S  +CDA  Q
Sbjct: 395 CNEISCDGITANGTYPGQYGSYSYCDAKQQ 424


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 131 HVTYIGRYHRLYT*WY 84
           H TYIGR+H+ +  W+
Sbjct: 430 HNTYIGRWHKFFQGWF 445


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 552 SDTMYRYIILNAHPNLCMKTFWNNA*D 632
           S + +R ++LN HP+  +K   NNA D
Sbjct: 467 SSSAFRLLLLNMHPHDELKQLINNAVD 493


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,673,875
Number of Sequences: 5004
Number of extensions: 55023
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)