Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13k24
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0182 - 11552540-11552606,11552692-11552787,11553458-115535... 129 2e-30
05_01_0315 - 2468267-2468293,2469021-2469070,2469159-2469234,246... 30 1.4
09_06_0246 + 21837144-21838194,21838692-21840038,21840576-218406... 29 4.3
03_01_0293 - 2258647-2258754,2258861-2259085 29 4.3
09_06_0020 - 20267190-20267612,20269086-20269495,20269573-202697... 28 5.7
12_01_0590 - 4813764-4814401,4814785-4814872,4815176-4815376,481... 28 7.5
08_02_1176 + 24931728-24931877,24933175-24933275,24934410-249347... 28 7.5
06_03_1312 - 29246828-29246899,29247011-29247058,29247138-292472... 27 9.9
>10_06_0182 -
11552540-11552606,11552692-11552787,11553458-11553528,
11553660-11553764,11554149-11554239,11554331-11554381,
11554478-11554566,11554667-11554909,11555027-11555190,
11555883-11555988,11556075-11556242,11557456-11557494,
11557582-11557713
Length = 473
Score = 129 bits (311), Expect = 2e-30
Identities = 61/108 (56%), Positives = 76/108 (70%)
Frame = +2
Query: 299 MTSSMNQCNTVTRYLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTHS 478
+++S + +L Q EAA +D+ L FSVDQLMELAGLSVA+A+A+V+ H+
Sbjct: 6 VSASASASGEEVTHLAQREAAEIDEQLMGPLGFSVDQLMELAGLSVAAAVAEVYKLGEHT 65
Query: 479 SALIVCGPGNNGGDGLVAARHMQLFGYNVSVHYPKRTPKPLYENLLEQ 622
L++CGPGNNGGDGLVAARH+ FGY SV YPKRTPKPLY L Q
Sbjct: 66 RVLVICGPGNNGGDGLVAARHLHHFGYKPSVCYPKRTPKPLYSGLCTQ 113
>05_01_0315 -
2468267-2468293,2469021-2469070,2469159-2469234,
2469498-2469575,2469967-2470048,2470146-2470238,
2470564-2470673,2470831-2470893,2471293-2471344,
2471421-2471545,2472681-2472794,2472917-2472961,
2473278-2473337,2474725-2474778,2474944-2474992,
2475071-2475252,2475349-2475404,2475491-2475584
Length = 469
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = -2
Query: 214 YCFSFTNN-RYVVWFQMSVKIIFYLNPMCM-LPI*VGIIDYTLNGMICIIMYYSLIYIFT 41
YC+S +VW +SV + YL+ C+ + + +I+Y++ + + Y S+ ++F
Sbjct: 83 YCYSLKGRGASLVWLLLSVTYLCYLHGACVSFILLIALINYSI-VKVLEVAYLSIEHMFV 141
Query: 40 NCH 32
+ H
Sbjct: 142 DVH 144
>09_06_0246 +
21837144-21838194,21838692-21840038,21840576-21840656,
21842740-21842924
Length = 887
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 341 LNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPS-THSSALIVCGPGNNGG 517
L +E D + + ++++ Q + A+A+A FP S T + L +C P ++GG
Sbjct: 322 LRDAERIVYDDNGCSYKQYTISQYFTTSA-GEAAAMATAFPYSFTRTKHLTLCPPSSHGG 380
Query: 518 D 520
D
Sbjct: 381 D 381
>03_01_0293 - 2258647-2258754,2258861-2259085
Length = 110
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +2
Query: 485 LIVCGPGNNGGDGLVAARHMQLFGYNVSVHYP 580
+ V G G GD + RH QLFGY SVH P
Sbjct: 9 MFVGGIGPYTGDEDLR-RHFQLFGYVASVHMP 39
>09_06_0020 -
20267190-20267612,20269086-20269495,20269573-20269747,
20270833-20271066,20271164-20271265,20271354-20272091,
20272204-20272321,20272417-20272667,20272768-20272932
Length = 871
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 392 KFSVDQLMELAGLSVA---SAIAKVFPPSTHSSALIVCGPGNNGGDGLVA 532
K +D++ LAG + S+I+ PPS + + + G G+NGG GL A
Sbjct: 239 KDELDRVCALAGKFLGRPISSISSPGPPSLQACSGLELGVGSNGGFGLGA 288
>12_01_0590 - 4813764-4814401,4814785-4814872,4815176-4815376,
4816803-4816830,4817136-4817339,4817352-4819136,
4820358-4821139
Length = 1241
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 473 HSSALIVCGPGNNGGDGLVAARHMQLFGYNVSVHYPKR 586
H+ ALI CG G+NG + G HY KR
Sbjct: 1178 HAVALIGCGVGSNGNKTETFYKVRNSHGIKAHSHYQKR 1215
>08_02_1176 +
24931728-24931877,24933175-24933275,24934410-24934788,
24935509-24936354,24936555-24936642,24936947-24937039,
24937221-24937318,24937364-24937470,24938266-24938353,
24938748-24939005
Length = 735
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +2
Query: 389 YKFSVDQLMELAGLSVASAIAKVFPPSTHSSALIVCGPGNNGGDGLVAARH 541
+K S ++ + L G S + I KV S+H +A PG GG + ARH
Sbjct: 629 HKESAERALSLNGTSFMARILKVVRRSSHEAAHFYGWPG--GGRTSMYARH 677
>06_03_1312 -
29246828-29246899,29247011-29247058,29247138-29247215,
29247304-29247360,29247597-29247662,29247750-29247839,
29248136-29248213,29248318-29248422,29248534-29248669,
29248778-29248853,29248973-29249177,29249289-29249501,
29250073-29250795
Length = 648
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -2
Query: 466 GWE-DLGNGTSNTQASKFHKLIDTKLVFSE 380
GWE D G+ NT AS+F + ID FSE
Sbjct: 344 GWEVDQGSYFPNTFASRFDEGIDASFDFSE 373
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,785,348
Number of Sequences: 37544
Number of extensions: 348587
Number of successful extensions: 794
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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