Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13k23
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    29   0.70 
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    28   1.6  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    27   3.7  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    27   3.7  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    26   6.5  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   8.6  

>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 337 CSCIILLNLYVDS-HHGYRTDFSSLFRTYR*LF 242
           C+C+I    Y+ S +HGY  D SSL   ++ LF
Sbjct: 366 CTCMISGRCYITSQNHGYAVDASSLSNGWKELF 398


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = -2

Query: 605 NCLSVGEASEDCISISECLWHNLVSRAELFSKSILFLLAINTLC 474
           NCL + E+ +   ++  CL+  ++S +  F     F+ +I  +C
Sbjct: 153 NCLRIAESGKCLCTVCSCLYQGIISHSPTFRP---FVSSIRNIC 193


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 279 ISHHYFVHIVSYFVLTGAAICYIF 208
           ++HHYFV +V    L  A IC++F
Sbjct: 291 LTHHYFVDLVGGMCL--AIICFVF 312


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 337 CSCIILLNLYVDSHHGYRTDFS-SLFRTYR 251
           CS I  L+  +DS HGY  D S SL + Y+
Sbjct: 841 CSQIASLSWDIDSPHGYIIDLSKSLIKLYK 870


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 383 FCLKTLFSKLGVFTSMFLYNITKSLCG 303
           FCL  ++  +GVF   ++Y +T  + G
Sbjct: 142 FCLYFIYIAIGVFGCSYIYTVTFIIAG 168


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 16/71 (22%), Positives = 30/71 (42%)
 Frame = +1

Query: 202  NYENVANSSSSEYKIANDMYEIMMRNQFDIHGDYPHRDLVILYKNIDVNTPNFENNVLRQ 381
            NYEN     S   +   D+  I+     D+H  +P +      +NI  +  N++ +    
Sbjct: 1141 NYENETEGFSINIREILDLLSILYYGIRDVHTLFPDKHFRGNIENILTDFSNWKLSAKLN 1200

Query: 382  KSNQRVETVVH 414
            +  +  + VVH
Sbjct: 1201 RQLEEQQLVVH 1211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,595,775
Number of Sequences: 5004
Number of extensions: 48112
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)