Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13k23
         (744 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-2908|AAF55834.2| 4496|Drosophila melanogaster CG3723-PA...    32   0.95 
BT029686-1|ABL75743.1|  394|Drosophila melanogaster IP17383p pro...    29   8.8  
AY160083-1|AAN77520.1| 1910|Drosophila melanogaster alpha1U prot...    29   8.8  
AE014298-2026|AAF48365.2| 2196|Drosophila melanogaster CG1517-PB...    29   8.8  

>AE014297-2908|AAF55834.2| 4496|Drosophila melanogaster CG3723-PA
            protein.
          Length = 4496

 Score = 31.9 bits (69), Expect = 0.95
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
 Frame = +1

Query: 178  NSEGTKGSNYENVANSSSSEYKIANDMYEIMMRNQFDIHGDYPHRDLVILYKNID----- 342
            N +         + N ++ E+K  + ++ ++MR+Q +I GD P    ++L  +ID     
Sbjct: 2190 NPKAVTNDELFGIINPATREWK--DGLFSVLMRDQANITGDQP--KWIVLDGDIDPMWIE 2245

Query: 343  -VNTPNFENNVLRQKSNQRV 399
             +NT   +N VL   SN+R+
Sbjct: 2246 SLNTVMDDNKVLTLASNERI 2265


>BT029686-1|ABL75743.1|  394|Drosophila melanogaster IP17383p
           protein.
          Length = 394

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 4/29 (13%)
 Frame = +1

Query: 19  RNVDQIYNKTILYVFFLNTY----IRFFG 93
           R+  QIYN T+ ++FF++ Y    ++FFG
Sbjct: 44  RSSQQIYNVTLFFLFFMSLYGLLGVQFFG 72


>AY160083-1|AAN77520.1| 1910|Drosophila melanogaster alpha1U protein
           protein.
          Length = 1910

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 4/29 (13%)
 Frame = +1

Query: 19  RNVDQIYNKTILYVFFLNTY----IRFFG 93
           R+  QIYN T+ ++FF++ Y    ++FFG
Sbjct: 170 RSSQQIYNVTLFFLFFMSLYGLLGVQFFG 198


>AE014298-2026|AAF48365.2| 2196|Drosophila melanogaster CG1517-PB,
           isoform B protein.
          Length = 2196

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 4/29 (13%)
 Frame = +1

Query: 19  RNVDQIYNKTILYVFFLNTY----IRFFG 93
           R+  QIYN T+ ++FF++ Y    ++FFG
Sbjct: 456 RSSQQIYNVTLFFLFFMSLYGLLGVQFFG 484


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,105,781
Number of Sequences: 53049
Number of extensions: 471810
Number of successful extensions: 1175
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3375989364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)