Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13k23
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68159-6|CAA92287.5|  485|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical pr...    29   4.6  

>Z68159-6|CAA92287.5|  485|Caenorhabditis elegans Hypothetical
           protein C33D9.6 protein.
          Length = 485

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 23/90 (25%), Positives = 37/90 (41%)
 Frame = +1

Query: 328 YKNIDVNTPNFENNVLRQKSNQRVETVVHXXXXXXXXSEISEINSAEDLHNVFMANKKRI 507
           Y N+D N P+F  N+  QK   R E            +E+   N  + ++ +   NK  +
Sbjct: 96  YSNLDDNVPSFLRNL--QKWRLRDELTKSIEQEEKLKAELKHAN--DQINMIVEHNKLEL 151

Query: 508 DLLNNSALDTRLCHKHSDIEIQSSLASPTD 597
           D LN   L+ +   K  +  IQ  +    D
Sbjct: 152 DALNKINLEAKAQEKIQEEIIQRCMKRVED 181


>U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical
           protein F28B4.3 protein.
          Length = 2229

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 256 MYEIMMRNQFDIHGDYPHRDLVILYKNIDVNTPNFENNVLRQKSNQRVE 402
           MY  + R+Q  + GDY H     +YK++ V+    +  V+   SN +++
Sbjct: 604 MYNTLFRSQLALSGDYSHCANQNIYKSVAVDVTADQVVVVATGSNLKLQ 652


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,022,984
Number of Sequences: 27780
Number of extensions: 260693
Number of successful extensions: 754
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)