Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13k13
         (663 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0352 + 17091637-17091945,17092049-17096617,17096975-170971...    32   0.35 
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278...    31   1.1  
01_06_1296 + 36088467-36088582,36088697-36088819,36088938-36089607     30   1.9  
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989...    29   3.3  
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026...    28   7.6  

>10_08_0352 + 17091637-17091945,17092049-17096617,17096975-17097187,
            17097266-17097494,17097857-17097981
          Length = 1814

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 20/76 (26%), Positives = 35/76 (46%)
 Frame = +1

Query: 382  RSEADSSSTTVHXEEGNLIARSRASGFKFQPNLNSREEIERFRTSVDDISCDKVTQRLGL 561
            RS+  +SS       G++I + +   +K   N+N R+ IER   S + +S   V + +  
Sbjct: 1217 RSKEHASSKQKVDTSGSVIEKVKEGRYK-SANINDRKHIERVHDSANKMSTTSVEKSIPE 1275

Query: 562  TEPPVADTSSGQXMAD 609
            T  P+  T +     D
Sbjct: 1276 TVKPMKATKNNSKATD 1291


>10_07_0176 -
           13826764-13827064,13827271-13827377,13827474-13827836,
           13827912-13828079,13828153-13828374,13828784-13829023,
           13829640-13829719,13829853-13830018,13830720-13830783,
           13830861-13830962,13831085-13831227,13831370-13831474,
           13831551-13831706,13832125-13832241,13832315-13832392,
           13832466-13832550,13833334-13833455,13833546-13833611,
           13835190-13835284,13835427-13835523,13835873-13835983,
           13836083-13836164,13836292-13836353,13836620-13836685,
           13838002-13838232
          Length = 1142

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 145 GCRFQLSPVPGSPSAS*HCCSSRRPNGSLGEQENELDAFRLNV 17
           G   +  P P +PS    CC+ R  N  +G + N +   + NV
Sbjct: 46  GASLRRQPQPQAPSVRTICCNDREANAPVGYKGNSVSTTKYNV 88


>01_06_1296 + 36088467-36088582,36088697-36088819,36088938-36089607
          Length = 302

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 146 QXKNYLRASKRSRRLRMTXTEPAPLCVQERRGEPINPPRLQRLKL*AER 292
           Q  +YL    RS RL +T   P  L  +E      +PP ++ + L A +
Sbjct: 15  QASSYLTDKIRSARLALTDVTPTQLMTEEATSGDASPPNVKTMSLIARQ 63


>01_06_0124 -
           26692731-26697046,26698749-26698827,26698899-26698955,
           26699321-26699416
          Length = 1515

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/84 (22%), Positives = 39/84 (46%)
 Frame = +1

Query: 289 AETTNSSVDDEAKIERELAEMYKDNSDYQTDRSEADSSSTTVHXEEGNLIARSRASGFKF 468
           A   N   D E ++ER ++ M+K+N D +   S   +   TV  ++   +A +   G K 
Sbjct: 481 ASFENLGNDLEQELER-ISIMHKNNEDLELVNSNLQNDLATVQGQKNEAVASTLELGNKL 539

Query: 469 QPNLNSREEIERFRTSVDDISCDK 540
           +      ++I   + +V+++   K
Sbjct: 540 E---EKNQQISNLQEAVENLEAAK 560


>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
            18303723-18303836,18303903-18304046,18316147-18316312,
            18316396-18317130,18317219-18317422,18317496-18318177,
            18318272-18318528,18318604-18319298,18319345-18319382,
            18319847-18319928,18320018-18320112,18320443-18320526,
            18320601-18320891,18321521-18321853,18321948-18322150,
            18322243-18322399,18322482-18322585,18322675-18322835,
            18323511-18323824,18324317-18324589,18324666-18324967,
            18325459-18325549,18326140-18326190,18326700-18326768,
            18326926-18327017,18327082-18327148,18328582-18328746,
            18329027-18329103,18329572-18329766,18330208-18330275,
            18331081-18331172,18331399-18331522,18331608-18331705,
            18332384-18332997,18333620-18333626
          Length = 2892

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 155  NYLRASKRSRRLRMTXTEPAPLCVQERRGEPINPPRLQRLK 277
            NY +  KR   +    T     C Q+RRG+ + P +++RL+
Sbjct: 1356 NY-KKEKRLNGMGQVCTVHEAHCAQDRRGDGVRPRQIRRLR 1395


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.127    0.341 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,171,360
Number of Sequences: 37544
Number of extensions: 369640
Number of successful extensions: 701
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)