Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13k10
         (309 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    27   0.48 
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    25   2.6  
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   2.6  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    24   5.9  

>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 27.5 bits (58), Expect = 0.48
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 304 FLLKYLF*TFSSDLHNICNLNIFF*ITSYYHVISIGTRVWTFL 176
           +L++Y++       H+I NL I F   + +H IS     W +L
Sbjct: 438 WLIRYIYVPLGGSNHSILNLFIIFTFVALWHDISWELFAWGWL 480


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 81  LGLTE*TAVFFLYRPLYYSGCCYSRFLCVTQNKN 182
           L L +    +FLYR L      YS+++   Q++N
Sbjct: 296 LSLVKFICDYFLYRKLSLKNLDYSKYITFVQDRN 329


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 114 EKKLLFTQLNPKQHKDSTILSPNRISIYK 28
           ++K+LF  ++   H+ S I SPN    YK
Sbjct: 186 QRKILFNAIDILSHEISLIASPNSKKKYK 214


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
          factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 81 KQHKDSTILSPNRISIYKYFQNEXE 7
          K  KD+T+ SPN  S   +F+   +
Sbjct: 14 KSEKDTTVNSPNASSFSSFFKKSSQ 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,115,565
Number of Sequences: 5004
Number of extensions: 19100
Number of successful extensions: 51
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)