Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13k08
(661 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 31 0.19
SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi... 27 2.4
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 27 2.4
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 26 4.2
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 4.2
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 26 5.5
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 25 7.3
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 25 7.3
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 25 7.3
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 25 9.7
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 9.7
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 25 9.7
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 30.7 bits (66), Expect = 0.19
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +2
Query: 179 TSSHLLFNRFISVQHPKQNYIRL*K--FTVSIHYIFFAHDIVAVPTKR 316
TSS LL + +S+ P+Q ++ K T S Y+ H++VA +KR
Sbjct: 302 TSSPLLDQKLLSINKPQQEKLKFPKLLLTNSSDYVRIFHELVAFSSKR 349
>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 506
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 297 LLSQQSDLYNSIRGSVQNQSRDLGGQETLLLNMVRARKVQDVEA 428
LL +SDLY+ G V+ R GG L+ +KV D A
Sbjct: 399 LLLVKSDLYSINHGQVEMNPRRFGGTAPLVKLGAHFKKVADFSA 442
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +3
Query: 189 ISFLTDSSPYNILNRITSDCESSPSASITFSSRMISLLSQQSDLY 323
I + S P I + + DC + TF+ ++ L +SD+Y
Sbjct: 518 IDAIEKSEPIGIFSCLDEDCVMPMATDATFTEKLHLLFKGKSDIY 562
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 26.2 bits (55), Expect = 4.2
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Frame = +3
Query: 123 KGRYSSLYSARRVSLPKEEPHRISFLTDS--SPYNILNRITSDCESS-PSASITFSSRMI 293
+ +Y SL+ A+++S H+ F++ S + + +TS ++S PS S + SS
Sbjct: 216 QNKYESLH-AKQISASDLSLHQ-EFVSASIVQQPELNSLLTSQSKNSTPSESDSSSSESS 273
Query: 294 SLLSQQSDLYNSIRGSVQNQSRDLGGQET 380
S +S SDL ++ S ++S D Q +
Sbjct: 274 SSVSDSSDLSSTSDSSSGDESSDTARQSS 302
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 192 SFLTDSSPYNILNRITSDCESSPSASITFSSRMISLLSQQSDLYNSIRG 338
S L S+P + ITS S+ ++++S ++S +S S L +S G
Sbjct: 3472 SVLNSSTPISSSTVITSSVVIGSSSVLSYASSIVSSVSLNSSLLSSSGG 3520
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +3
Query: 210 SPYNILNRITSDCESSPSASITFSSRMISLLSQQSDLYNS 329
+P +I +R + C S+PS+++T S+ S QS+ YN+
Sbjct: 301 NPLSISSRPSPCCPSTPSSAVTLSNGFDS----QSNAYNN 336
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 164 TSERRTSSHLLFNRFISVQHPK 229
TS + + +LFN F S+Q PK
Sbjct: 191 TSNAKITDTMLFNHFSSIQKPK 212
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +3
Query: 564 DMDIPSILAFTANTTQPVQLKMPVGQQSNI 653
D+ +P T++PV+L+ P+ + SN+
Sbjct: 716 DVVVPDTTDEEVITSEPVKLEQPINENSNV 745
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 25.4 bits (53), Expect = 7.3
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Frame = +3
Query: 93 ETSWRKDGDWKGRYSSLYSARRVSLPKEEPHRISFLTDSSPYNILNRITSDCESSPSAS- 269
E S R+ G S+ Y R L K + S PY + D + +A
Sbjct: 22 ERSQRRSQSPPGEQSA-YHRERSPLRKRGNYYDDRTRASGPYPTFTKPLIDPYTQTNAVS 80
Query: 270 ----ITFSSRMISLLSQQSDLYNSIRGSVQNQSRDL 365
I + S+ + + DLYNS+ G+ N +DL
Sbjct: 81 YERFIRWYSKENHISATTEDLYNSLHGTYNNYKQDL 116
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 219 NILNRITSDCESSPSASITFSSRMISLLSQ 308
N+LN+ S + +PS S F+ R L+S+
Sbjct: 74 NLLNKFMSAQDGTPSKSTGFNERSSQLVSE 103
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 69 YENLMQKVETSWRKDGDWKGRY 134
YEN + ++E WR+D D Y
Sbjct: 519 YENKLMRMEQQWREDVDQLQEY 540
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 25.0 bits (52), Expect = 9.7
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +3
Query: 216 YNILNRITSDCESSPSASITFSSRMISLLSQQSDLYNSIRGSVQNQSRDLGGQETLL 386
YN LNR+ S+ + + S S+ F S ++ L ++ L +V N + ++ G LL
Sbjct: 1311 YNTLNRLLSEEKENLSLSVGFVSGLLQLCHRK--LSQLFEKAVINPTIEVYGDIVLL 1365
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,485,441
Number of Sequences: 5004
Number of extensions: 47366
Number of successful extensions: 136
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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