Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13k08
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0189 + 15165485-15168694                                         30   1.4  
08_02_0538 - 18321101-18321128,18321767-18322587                       29   2.5  
04_04_0682 - 27229936-27231087,27231954-27232337                       29   4.3  
05_06_0286 + 26932395-26933155,26934287-26934407,26934496-269347...    28   5.7  
06_03_0640 - 23059473-23060489,23060592-23060651,23063163-230632...    28   7.6  
05_06_0279 + 26896997-26897457,26898100-26898220,26898310-268985...    28   7.6  

>12_02_0189 + 15165485-15168694
          Length = 1069

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/62 (24%), Positives = 31/62 (50%)
 Frame = +3

Query: 108 KDGDWKGRYSSLYSARRVSLPKEEPHRISFLTDSSPYNILNRITSDCESSPSASITFSSR 287
           K GD+K +  SL  A  V + KE+PH ++     +  ++      +   SPS   + +++
Sbjct: 411 KTGDYKNKEFSLLLADSVLVCKEKPHVLTAFVSKADGDVFYSFDEEKTGSPSVKPSLNAK 470

Query: 288 MI 293
           ++
Sbjct: 471 VM 472


>08_02_0538 - 18321101-18321128,18321767-18322587
          Length = 282

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 285 RMISLLSQQSDLYNSIRGSVQNQSRDLGGQETLLLNMVRARK 410
           ++ SLL  +  L   +RG V+    +L G + LL+ +V   K
Sbjct: 19  KLASLLDDEYTLLREVRGDVEFLQAELSGMDDLLVRLVEMEK 60


>04_04_0682 - 27229936-27231087,27231954-27232337
          Length = 511

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 1/117 (0%)
 Frame = +3

Query: 66  FYENLMQKVETSWRKDGDWKGRYSSLYSARRVSLPKEEPHRISFLTDSSPYNILNRITSD 245
           ++E L   ++   R  G     Y+      +     E+  +  F TD+ P+N+L     D
Sbjct: 166 YFEELPDPLKDK-RTYGSLLNVYAQAMMKEKTESTFEQMRKKGFATDTLPFNVLMNFYVD 224

Query: 246 CESSPSASITFSSRMISLLSQQSDLYNS-IRGSVQNQSRDLGGQETLLLNMVRARKV 413
            E +   SI     M   ++     YN  I+     Q  D    E +   M+R   V
Sbjct: 225 AEEAEKVSILIDEMMERNVAFDVCTYNIWIKSCAAMQDAD--AMEQVFNQMIRDETV 279


>05_06_0286 +
           26932395-26933155,26934287-26934407,26934496-26934772,
           26934934-26935094
          Length = 439

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 294 ISCAKKM*WMLTVNFHSLM*FCLGCCTEMNRLKRRCDEVLL 172
           + CA  +  M  V+ H+L   C G C E+N   RR D V++
Sbjct: 364 VGCADDIEPMCVVSIHNLQGSCFGGCHEIN---RRIDYVMI 401


>06_03_0640 -
           23059473-23060489,23060592-23060651,23063163-23063283,
           23063476-23065496
          Length = 1072

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 346 CTLPRMLLYKSLCWDSNDIMREENVMDADGE-LSQSDV 236
           CTL  +L    LCW S+ +   E +  +D + + +SD+
Sbjct: 250 CTLDELLQGHGLCWSSDVVGASETISQSDPDRVRKSDI 287


>05_06_0279 +
           26896997-26897457,26898100-26898220,26898310-26898586,
           26898735-26898895
          Length = 339

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 294 ISCAKKM*WMLTVNFHSLM*FCLGCCTEMNR 202
           + CA  +  M  V+ H+L   C G C E+NR
Sbjct: 264 VGCADDIEPMCVVSIHNLQGSCFGGCHEINR 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,975,794
Number of Sequences: 37544
Number of extensions: 304856
Number of successful extensions: 773
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)