Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13k08
         (661 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68316-5|CAL49438.1|  326|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AF003385-2|AAB54249.1|  773|Caenorhabditis elegans Hypothetical ...    28   6.8  
AL117200-9|CAB60586.1|  807|Caenorhabditis elegans Hypothetical ...    27   8.9  

>Z68316-5|CAL49438.1|  326|Caenorhabditis elegans Hypothetical
           protein K08E4.7 protein.
          Length = 326

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 336 LGCCCTSRFVGTATISCAKKM*WMLTVNFHSLM*FCL 226
           L CCC    +   +++ AKK+ W      + LM  CL
Sbjct: 248 LMCCCEKILIKADSVNLAKKLIWAERFALNELMDHCL 284


>AF003385-2|AAB54249.1|  773|Caenorhabditis elegans Hypothetical
           protein R08F11.7 protein.
          Length = 773

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 315 DLYNSIRGSVQNQSRDLGGQETLLLNMVRARKVQ 416
           DL N+I  + Q   + LGG ET+LL +++   +Q
Sbjct: 555 DLGNNIFYADQVYQKSLGGSETMLLGLIKTAGMQ 588


>AL117200-9|CAB60586.1|  807|Caenorhabditis elegans Hypothetical
           protein Y50E8A.16 protein.
          Length = 807

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +3

Query: 129 RYSSLYSAR--RVSLPKEEPHR-ISFLTDSSPYNILNRITSDCES 254
           +Y+   +AR  RVSL +   H+ ISF  D+    +++RIT D ES
Sbjct: 296 QYAERLTARNIRVSLFRAILHQDISFFDDNKTGQLMSRITKDSES 340


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,926,037
Number of Sequences: 27780
Number of extensions: 278093
Number of successful extensions: 689
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)