Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13k07
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    30   0.26 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   2.5  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.3  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    25   7.5  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   7.5  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    25   9.9  

>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 269 FFYIFKYFLH*SIIFNFILLNSQFFFINAHYMKSIKTISLFLI 141
           F+  F Y L   I+ +F+L        + HY+K +K I+L  I
Sbjct: 107 FWRYFAYLLSLQIVIDFVLYKLSSAMASLHYLKFVKIIALSYI 149


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 278 LMFFFYIFKYFLH*SIIFNFILLNSQFFFI 189
           L+ FF+   +FL  S  F+F+   SQ F +
Sbjct: 116 LLLFFFFLLFFLSFSFSFSFLFFLSQIFIV 145


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -1

Query: 153  SFFNQSKVY-HLIVFLKINANSYK 85
            SFFN SK Y HL+  LK  +  YK
Sbjct: 1565 SFFNSSKTYMHLVTLLKERSYLYK 1588


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -3

Query: 373 SYRCKLVTTNQYSTILQHFTFKQNFSCMF 287
           S+  KL++ +  ST+ +H+ +   ++C+F
Sbjct: 400 SFAEKLISQSDESTLCKHYVYASLYACLF 428


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 550 KRICPPLKLVITKKNTSYLSEDLTFLR*LKQ 642
           ++I   LK ++T+   SY+SED   LR L +
Sbjct: 610 EKIFSKLKHLLTRTRDSYISEDTKILRLLNR 640


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = +2

Query: 263 KKKTSMSIKHTTEVLF---ECKMLEDGGILISCYKFTAVRLVHSFAI 394
           KK+ ++S     + L    E   L D  ++  C+ F A  L HS A+
Sbjct: 447 KKRKTLSESQAGDTLMSSEESHQLYDSDVMDCCFSFLASILTHSIAL 493


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 58  FKRGFRLNKFIRICIYFEKY 117
           F+ G R+ K+I   +Y++KY
Sbjct: 103 FRAGMRIAKYIDPAVYYDKY 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,641
Number of Sequences: 5004
Number of extensions: 50128
Number of successful extensions: 82
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)