Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13k05
(613 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po... 56 5e-09
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|... 42 9e-05
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 33 0.025
SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 31 0.13
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 29 0.53
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces... 28 0.93
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.1
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 27 2.8
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 27 2.8
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 26 3.7
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 3.7
SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 4.9
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 26 4.9
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 26 4.9
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc... 25 6.5
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 6.5
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 25 6.5
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 25 8.6
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 25 8.6
>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 330
Score = 55.6 bits (128), Expect = 5e-09
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Frame = +1
Query: 265 SQIIPGLYLSNARAAADKNVLRSLNITHVLTIAANRLPKSTFYDTDINTLFIRAYDTPQT 444
S+I LY+S+ + A++ I + L+ A + P + + L+++ D+
Sbjct: 48 SEISKNLYISSWKTASELVSTSDKGIDYTLS-AMSINPNLSVPEQQ--HLWLQIEDSSSQ 104
Query: 445 NLLPYFPMANSFIDEGLQAG-NVLVHCHFGVSRSATLVIAYIMEKYKLTFEQAYVYV 612
N+L YF +N FI L VLVHC G+SRS TLV AY+M++ E+A ++
Sbjct: 105 NILQYFEKSNKFIAFALSKNAKVLVHCFAGISRSVTLVAAYLMKENNWNTEEALSHI 161
>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 278
Score = 41.5 bits (93), Expect = 9e-05
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +1
Query: 508 VLVHCHFGVSRSATLVIAYIMEKYKLTFEQAYVYV 612
VL++C G+SRSA L+IA+IM+ L AY YV
Sbjct: 154 VLINCQMGISRSACLMIAFIMKTLNLNVSDAYEYV 188
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 33.5 bits (73), Expect = 0.025
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +1
Query: 451 LPYFPMANSFID---EGLQAGNVLVHCHFGVSRSATLVIAYIMEKYKLTFEQAYVYV 612
+P + FID E + G + VHC G+ R+ L+ AY++ K+ T + Y+
Sbjct: 260 VPELSLVKEFIDLTEEVEEDGVIAVHCKAGLGRTGCLIGAYLIYKHCFTANEVIAYM 316
>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 31.1 bits (67), Expect = 0.13
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 4/148 (2%)
Frame = +1
Query: 22 TSNTVCKNYSKQKNINTQCENKIFIIISMISARGLLFVMFKSAFIVAFL--TIPNPVVAL 195
T + ++S+++N+ + + + +I+ S R LL + + S I FL I P+ AL
Sbjct: 142 TLGDISWSFSRRENMKFEKDQQ-YILSKFKSPRNLL-IPYPSFLIQKFLDMAILPPMAAL 199
Query: 196 SSFKNWSRKAFYHKIDLCTQSCYSQIIPGLYLSNARAAADKNVLRSLNIT--HVLTIAAN 369
R FY T S L N + + L++ H+ ++A
Sbjct: 200 -------RILFYQYSKASTMSLTDDFYNKYVLENLNIINNLQIFLHLDLEPLHIKSLAKA 252
Query: 370 RLPKSTFYDTDINTLFIRAYDTPQTNLL 453
R FY+TD+ T F+ A+ + +L
Sbjct: 253 R---KRFYETDLKTTFLNAFSRDELLML 277
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 29.1 bits (62), Expect = 0.53
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 478 FIDEGLQAGNVLVHCHFGVSRSATLVI 558
+++ +GN +VHC GV R+ T ++
Sbjct: 456 YVNNSHGSGNTIVHCSAGVGRTGTFIV 482
>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 287
Score = 28.3 bits (60), Expect = 0.93
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 193 LSSFKNWSRKAFYHKIDLCTQSCYSQIIPGLYLSNARAAADKNV 324
LSS +W AF + C S +I YL++ +AAA N+
Sbjct: 199 LSSLNSWQLAAFERSVSCCKSFIVSFMILKGYLNSEKAAALTNL 242
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 2.1
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +2
Query: 239 STSALNLATARSFLASI*AMPVLQPTKMSFEASTSRTCSPLRRIASRNLLSMIPTSTPCS 418
S++++ ++ + S L+S + P+ T S +STS + + +S S PTST S
Sbjct: 151 SSTSVEVSISSSSLSS--SDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSS 208
Query: 419 -LGPTTLLRPISCPTS 463
L ++++ S P+S
Sbjct: 209 YLSSSSVVSSSSSPSS 224
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 401 TSTPCSLGPTTLLRPISCPTSQWPTP 478
+ST + PT++ PI+ P + PTP
Sbjct: 647 SSTTSQVAPTSIQEPIASPLTSKPTP 672
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 341 SRTCSPLRRIA-SRNLLSMIPTSTPCSLGPTTLLRPISCPTS 463
+R S R++ +++ LS+ P+STP + P L S PTS
Sbjct: 397 ARRASTANRVSVAKDRLSLTPSSTPSTPSPAESLPQPSNPTS 438
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -2
Query: 186 DRVGDGEESDNEGAFEHHKEQSSRTNHANNNEDFIFTLCIN 64
D D EESDNE + K+ S NN+ + +N
Sbjct: 238 DERSDEEESDNEQVNDEKKQSSEEDTTENNSAAEVIDETVN 278
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 395 IPTSTPCSLGPTTLLRPISCPTSQWPTPS 481
+P STP P+T +RP S T P+PS
Sbjct: 401 LPPSTPSK--PSTFVRPHSSSTDSPPSPS 427
>SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 117
Score = 25.8 bits (54), Expect = 4.9
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 359 LRRIASRNLLSMIPTSTPCSLGPTTLLRPISCPTSQWPT 475
L+ I LS +PT S+ T +R + CP WPT
Sbjct: 7 LKLILQSKKLSELPTHRK-SINMTIPVRALRCPIWLWPT 44
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 605 TYACSNVSLYFSMIYAMTRVADL 537
TYAC N+SL+F + + R L
Sbjct: 437 TYACGNISLFFCLYKRLWRQPQL 459
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 226 FYHKIDLCTQSCYSQ 270
FY +DLC + CYSQ
Sbjct: 336 FYRLMDLCLRYCYSQ 350
>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 402
Score = 25.4 bits (53), Expect = 6.5
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Frame = +1
Query: 283 LYLSNARAAADKNV-------LRSLNITHVLTIAANRLP 378
+YL N A DKNV L S N+ VL + RLP
Sbjct: 23 MYLDNLEANTDKNVLALCREYLASENVKEVLNLFLTRLP 61
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/63 (23%), Positives = 27/63 (42%)
Frame = +2
Query: 293 AMPVLQPTKMSFEASTSRTCSPLRRIASRNLLSMIPTSTPCSLGPTTLLRPISCPTSQWP 472
AM +P + A+ S++ +P S + PTS P ++L ++ + P
Sbjct: 150 AMASTEPVSVDSAAAPSQSTNPEGNGGSVGSQAAAPTSRPVENDAASILEALAAFAQKAP 209
Query: 473 TPS 481
PS
Sbjct: 210 VPS 212
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 412 LFIRAYDTPQTNLLPYFPMANSFIDEGLQ 498
+ +R YD+P N + P +FID+ L+
Sbjct: 245 VMLRKYDSPNKNAVLILPTLYAFIDKVLE 273
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 202 FKNWSRKAFYHKIDLCTQSCYSQI 273
F+N S+KAFY K+ YS++
Sbjct: 318 FRNPSKKAFYEKLHSLRNRSYSKL 341
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +1
Query: 151 FIVAFLTIPNPVVALSSFKNWSRKAFYHK----IDLCTQSCYSQIIPGLY 288
FI A++T+P +V + K WSR + K ID+ T ++ + +Y
Sbjct: 486 FIAAYITLPIFLVLYVAHKLWSRNWSFGKRIEEIDVTTGVAEAEALEQMY 535
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,374
Number of Sequences: 5004
Number of extensions: 51526
Number of successful extensions: 176
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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