Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13k05
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   2.4  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   5.4  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   5.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   7.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   7.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.5  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -2

Query: 192 RHDRVGDGEESDNEGAFEHHKEQSSRTNHANNNE 91
           RH    D + ++      HH  +S+  N  NNN+
Sbjct: 433 RHSSKSDNQNNNQHNDQAHHSSKSN--NRHNNND 464


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 316 CRLQHGHCSNRGQE 275
           C L  G C+N G+E
Sbjct: 46  CMLDEGPCTNEGRE 59


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 316 CRLQHGHCSNRGQE 275
           C L  G C+N G+E
Sbjct: 46  CMLDEGPCTNEGRE 59


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -1

Query: 64  CFFVLNSFCKQCLK*RLY 11
           C  ++ S+CK C+  R +
Sbjct: 290 CVNIVTSYCKTCISGRAF 307


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/36 (19%), Positives = 20/36 (55%)
 Frame = +1

Query: 184 VVALSSFKNWSRKAFYHKIDLCTQSCYSQIIPGLYL 291
           +VAL S+  ++   +   + +CT +  + ++ G+ +
Sbjct: 298 LVALGSYNKFNNNVYKDALIVCTVNSCTSMLSGIVI 333


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/36 (19%), Positives = 20/36 (55%)
 Frame = +1

Query: 184 VVALSSFKNWSRKAFYHKIDLCTQSCYSQIIPGLYL 291
           +VAL S+  ++   +   + +CT +  + ++ G+ +
Sbjct: 351 LVALGSYNKFNNNVYKDALIVCTVNSCTSMLSGIVI 386


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -2

Query: 141 EHHKEQSSRTNHANNNED 88
           +H+KE+S   +H N + +
Sbjct: 56  DHNKEKSKNNHHCNQDTE 73


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -1

Query: 553 PGSQTWKHQSDSGRARCPPVGPHQ 482
           PG Q   HQS     R  P  P Q
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQ 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,658
Number of Sequences: 438
Number of extensions: 3445
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)