Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13k02
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    26   4.5  
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    25   7.9  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    25   7.9  

>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 491 YIQNSSDNNVNTTMITMCYKIC 426
           Y+  ++D N++  MI +CY+ C
Sbjct: 343 YLMRNTDRNLDNWMIKICYEPC 364


>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 417 VKYTYFITHCYHCCVNIVIA*ILYVLHFINK 509
           + Y +     Y+ C+N  IA +L +LHF+ +
Sbjct: 103 LNYKWIYRKDYNLCLNQKIAFVLVMLHFMKR 133


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -3

Query: 342 FFVLNANIKFLACLNIHKHDSSLDDVVHESTTIYYRLHTHSHIT 211
           F  L  N+      +I K+D  L  +VHE+     RL  H H T
Sbjct: 265 FINLLNNVAKEKLTHIIKYDDYLVHLVHETLQYSVRLEQHFHYT 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,716,867
Number of Sequences: 5004
Number of extensions: 51887
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)