Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13j14
(477 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497... 32 0.28
03_06_0484 + 34233042-34233258,34235317-34237049 31 0.64
11_03_0072 + 9605273-9606814,9616982-9617016,9617271-9617348,961... 30 1.1
08_01_0604 - 5312558-5312622,5312826-5312917,5314128-5314245,531... 29 1.5
04_04_0329 + 24449574-24449633,24450261-24450320,24450510-244505... 29 2.6
05_06_0241 - 26634632-26636263 28 3.4
12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730... 27 5.9
10_01_0159 - 1807806-1809386 27 5.9
03_05_0803 + 27829438-27829461,27829558-27829643,27829960-278300... 27 5.9
03_01_0020 + 180963-181346,181432-181994,183000-183822 27 5.9
02_01_0097 + 712586-713035,714120-715080,715577-715746 27 5.9
01_06_0791 - 32026086-32026944,32027044-32027600,32027686-320279... 27 5.9
10_08_0941 - 21717703-21718091,21718454-21718564,21718707-217187... 27 7.8
03_04_0249 - 19341182-19342237,19342284-19342505 27 7.8
>07_03_0493 +
18747427-18748356,18748594-18748697,18749586-18749795,
18749992-18750597,18750819-18751095,18751163-18751310,
18751957-18752044,18752167-18752284
Length = 826
Score = 31.9 bits (69), Expect = 0.28
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 209 GLCCVCHKTPLQTRIYHSHLFCTECFH 289
G CC+CH+T + + +Y CT CF+
Sbjct: 772 GSCCICHQTQVDSLLYRCGHMCT-CFN 797
>03_06_0484 + 34233042-34233258,34235317-34237049
Length = 649
Score = 30.7 bits (66), Expect = 0.64
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Frame = +2
Query: 98 IHLEMEDTTTQQKNKTTIV-------KDEIDGKYYDAISYKTHD 208
+++ ED TT QKNK TI K+EI+ DA YK+ D
Sbjct: 493 LNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQDAEKYKSED 536
>11_03_0072 +
9605273-9606814,9616982-9617016,9617271-9617348,
9617427-9617501,9617583-9617657,9617731-9617977,
9618070-9618313,9618852-9619309,9619388-9619675,
9619751-9619788,9619882-9620452
Length = 1216
Score = 29.9 bits (64), Expect = 1.1
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Frame = +2
Query: 155 KDEIDGKYYD---AISYKTHDGLCCVCHKTPLQ-----TRIYHSHLFCTECFHKY-IWTA 307
K+ I+G +Y A + K +D +CC C+K +Q +R H HLF + Y WT+
Sbjct: 13 KEFIEGVHYFLRVAEANKRNDFICCPCNKCKIQKKYSASRTIHFHLFESGFMPSYNCWTS 72
Query: 308 -PKRDCSGDVDKPQGNN 355
++ + D+ Q N
Sbjct: 73 HSEQGVEMEEDEAQDEN 89
>08_01_0604 -
5312558-5312622,5312826-5312917,5314128-5314245,
5314423-5314438
Length = 96
Score = 29.5 bits (63), Expect = 1.5
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +2
Query: 38 RWQCQKSKSKQFQVLKFTINIHLEMEDTTTQQKN-KTTIVKDEI--DGKYYDAISYKTHD 208
+W+ S + + K N L ++ T N K I K ++ D KY +Y
Sbjct: 18 KWKEGASNTNESGGRKINENKLLSKKNRWTPYGNTKCVICKQQVHQDAKYCHTCAYSK-- 75
Query: 209 GLCCVCHKTPLQTRIY 256
G+C +C K L T++Y
Sbjct: 76 GVCAMCGKQVLDTKLY 91
>04_04_0329 +
24449574-24449633,24450261-24450320,24450510-24450562,
24450913-24450973,24451481-24451666,24451877-24451984,
24452196-24453418,24453571-24454405
Length = 861
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 146 TIVKDEIDGKYYDAISYKTHDGLCCVCHKTPLQ 244
T+ K E+DG + ++K H LC HK L+
Sbjct: 61 TMEKVEVDGNFIGTGNWKLHGALCKQLHKVVLE 93
>05_06_0241 - 26634632-26636263
Length = 543
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +3
Query: 264 IYFAPNVFISTYGQHRKETVRETWISHREIIEANR--EVNCST*KQFVKKLQFSCVG 428
+ F + + + G + +RETW+S++ +R +N + ++ +L+ C+G
Sbjct: 305 VEFCSVIALHSLGMLERIAIRETWVSYKHHSSFSRVMHINLNLRHGYINRLRDLCIG 361
>12_01_0797 +
7300370-7300506,7300682-7300798,7301903-7302443,
7302885-7304042,7304133-7304291,7304397-7304504,
7305045-7305304,7305936-7306101,7307025-7307050,
7307318-7307402,7307486-7307695,7308815-7308872,
7308964-7309037,7309323-7309373,7309576-7309664,
7310027-7310104,7310164-7310269
Length = 1140
Score = 27.5 bits (58), Expect = 5.9
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = -1
Query: 456 TILHMKFYLSPHKRIATFSQIVFKWNSLLLDLLQLFPCGLSTSPEQSLFGAV 301
T L M+ P+ I TFSQ++ +W+ +L++ L L G T + S FG +
Sbjct: 682 TSLPMEEMSEPYMAINTFSQLLTQWSLVLVNRL-LVSAGCGTCRDCS-FGTL 731
>10_01_0159 - 1807806-1809386
Length = 526
Score = 27.5 bits (58), Expect = 5.9
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 258 TAIYFAPNVFIS-TYGQHRKETVRETWISHREIIEA 362
TA + FIS + G + KETV+ TW+S ++A
Sbjct: 258 TAAQLLQHPFISKSCGLNNKETVKATWVSPTSALDA 293
>03_05_0803 +
27829438-27829461,27829558-27829643,27829960-27830088,
27830806-27830925,27831007-27831132,27831349-27831433,
27831538-27831648,27832215-27832308,27832448-27832728,
27832840-27832947,27833163-27833284,27833825-27834035,
27834149-27834376,27834591-27834680
Length = 604
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 392 FLSGTVYFSICFNYFPVAYPRLPNSLFSVLSICTY 288
F++ +Y SI NY PV PRL + ++C Y
Sbjct: 232 FINFKLYHSINVNYPPVLDPRLEALASELYALCRY 266
>03_01_0020 + 180963-181346,181432-181994,183000-183822
Length = 589
Score = 27.5 bits (58), Expect = 5.9
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -3
Query: 298 YVLMKTFGAK*MAVVDSRLQRSFVTDTT*AVVGFIADRVVILSVDFIF 155
Y M TF AV+D RL SFV V F+A ++L+V +
Sbjct: 369 YAQMTTFSVSQAAVMDRRLSTSFVIPAGSLTVFFVA--AILLTVPLYY 414
>02_01_0097 + 712586-713035,714120-715080,715577-715746
Length = 526
Score = 27.5 bits (58), Expect = 5.9
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -2
Query: 407 LFHKLFLSGTVYFSICFNYFPVAYPRLPNSLFSVLSICTYENIRCKIN-GCGRFSFAAEF 231
L H+LF +G S+ F Y P R + ++L +E +R + N G +F
Sbjct: 196 LLHELFDNGFHLISLFFPYLPTPQHRRRDKARAMLGEMIHEAVRSRRNSGVAEDDVLQKF 255
Query: 230 CDRHNISRR 204
D I+ R
Sbjct: 256 LDSKYINGR 264
>01_06_0791 -
32026086-32026944,32027044-32027600,32027686-32027903,
32028171-32028261
Length = 574
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 414 IATFSQIVFKWNSLLLDLLQLFPCGLSTSPE 322
IA F +VF W S ++ + PC +S SPE
Sbjct: 99 IACFVGMVFLWLSAMIPGARPPPCDMSASPE 129
>10_08_0941 -
21717703-21718091,21718454-21718564,21718707-21718791,
21718885-21719106,21719804-21720292,21722206-21722322
Length = 470
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 266 LFCTECFHKYIWTAPKRDCSGDVDKP 343
+FCTE H Y+WT P C +V P
Sbjct: 397 VFCTESPHLYMWT-PSGACCVNVPLP 421
>03_04_0249 - 19341182-19342237,19342284-19342505
Length = 425
Score = 27.1 bits (57), Expect = 7.8
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 44 QCQKSKSKQFQVLKFTINIHLEMEDTTTQQKNKTTIVKDEIDGKYYDAISYKTHD 208
QC S+ +QF+ L +NIHL+ D ++ + D + Y D + Y TH+
Sbjct: 172 QCSISR-RQFRRL---LNIHLDFRDDLHEEHTHNPLSIDYLSQFYEDGVRY-THE 221
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,091,198
Number of Sequences: 37544
Number of extensions: 231443
Number of successful extensions: 550
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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