Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13j13
(375 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0055 - 20316184-20317349,20317786-20317926,20318097-203182... 29 1.6
11_08_0007 + 27551173-27551828,27552071-27552282,27553371-275535... 28 2.7
11_08_0004 + 27518384-27519018,27519147-27519397,27520437-275205... 27 4.8
03_01_0170 + 1389759-1391159 27 4.8
01_07_0019 + 40494709-40494767,40495619-40495703,40495777-404958... 27 4.8
11_06_0364 - 22727978-22729149,22730475-22730727,22731628-227319... 27 6.3
11_06_0361 - 22711200-22712180,22712523-22712729,22715205-227159... 27 6.3
10_01_0180 - 2037656-2037858,2038517-2038579,2038909-2039782 27 6.3
09_06_0187 + 21433842-21433887,21434504-21435246,21435437-214354... 26 8.4
03_02_0377 - 7898075-7898605,7900782-7901000,7901079-7901142,790... 26 8.4
>03_05_0055 -
20316184-20317349,20317786-20317926,20318097-20318222,
20318382-20318429,20318536-20318640,20318746-20318890
Length = 576
Score = 28.7 bits (61), Expect = 1.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 199 DFTRQTVQDVRQAVLSSASLRPRIQEALERIN 294
DF RQT D + L RP + EAL+ +N
Sbjct: 544 DFIRQTFMDKQNVKLDCKRFRPILLEALDNLN 575
>11_08_0007 +
27551173-27551828,27552071-27552282,27553371-27553550,
27555154-27556187
Length = 693
Score = 27.9 bits (59), Expect = 2.7
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = +1
Query: 196 DDFTRQTVQDVRQAVLSSA--SLRPRIQEALERI 291
DD+ R+ + D Q +LSSA +LRPR E L+R+
Sbjct: 627 DDYARRNMYD--QDMLSSADDALRPRYMECLDRM 658
>11_08_0004 +
27518384-27519018,27519147-27519397,27520437-27520559,
27523499-27524529
Length = 679
Score = 27.1 bits (57), Expect = 4.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 196 DDFTRQTVQDVRQAVLSSASLRPRIQEALERI 291
DD+ R+ + D + +LRPR E L+R+
Sbjct: 613 DDYARRNMYDQNMLSSTDDALRPRYMECLDRM 644
>03_01_0170 + 1389759-1391159
Length = 466
Score = 27.1 bits (57), Expect = 4.8
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = +1
Query: 169 NCFVNSXQADDFTRQTVQDVRQAVLSSAS-----LRPRIQEALERINFRFHRTCSFSNII 333
N FVN+ + + V D+ V SS + L ++ E L RIN + F++ +
Sbjct: 162 NAFVNAIELVSAPDELVGDIGTLVTSSGTDQTNGLSSQVYEMLYRINVAGRKVTPFNDTL 221
Query: 334 RXCYVNEAETLL 369
+VN+ L+
Sbjct: 222 WRTWVNDERFLV 233
>01_07_0019 +
40494709-40494767,40495619-40495703,40495777-40495836,
40495934-40496044,40496127-40496204,40496276-40496347,
40496944-40497057,40498034-40498538,40499011-40499108,
40499185-40499215,40499346-40499520,40499849-40500008,
40501436-40501855,40502313-40503203
Length = 952
Score = 27.1 bits (57), Expect = 4.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 191 RRMISQDKQCRM*DRQSSHRPRSDQEFKKL*KESILDFIEL 313
+R ISQ D Q R R ++ K KE +LDF E+
Sbjct: 53 KRNISQFSGFVWTDNQEKQRTRIKEKLDKFNKEKLLDFCEI 93
>11_06_0364 -
22727978-22729149,22730475-22730727,22731628-22731963,
22732306-22732512,22734988-22735686,22736441-22736590,
22740204-22740962,22741023-22741235
Length = 1262
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 214 TVQDVRQAVLSSASLRPRIQEALERINFRFHRTCSFSNII 333
TV V+ A+L L+ R+Q L I F SF N++
Sbjct: 16 TVIKVQSAILEENQLKERVQHDLVFITDEFQMMQSFLNVV 55
>11_06_0361 -
22711200-22712180,22712523-22712729,22715205-22715903,
22717848-22717979,22720422-22721180,22721241-22721453
Length = 996
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 214 TVQDVRQAVLSSASLRPRIQEALERINFRFHRTCSFSNII 333
TV V+ A+L L+ R+Q L I F SF N++
Sbjct: 16 TVIKVQSAILEENQLKERVQHDLVFITDEFQMMQSFLNVV 55
>10_01_0180 - 2037656-2037858,2038517-2038579,2038909-2039782
Length = 379
Score = 26.6 bits (56), Expect = 6.3
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 205 TRQTVQDVRQAVLSSASLRPRIQEALERINFRFHRTCSFSNIIRXC 342
+R+ + D AV SS SLR + E L R + R+ + + ++R C
Sbjct: 52 SRRPLPDEIGAVASSLSLRYTVPELLRRTTTQRRRSRAETAVLRLC 97
>09_06_0187 +
21433842-21433887,21434504-21435246,21435437-21435484,
21435929-21436814,21436967-21437056,21437543-21438417
Length = 895
Score = 26.2 bits (55), Expect = 8.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 145 KMNRFITRNCFVNSXQADDFTRQTVQDVRQAVLSSASLRPRIQEALE 285
K+N N ++ QA + T V + +A L+SAS + + E LE
Sbjct: 248 KLNFTSELNTICSALQAVNLTSTEVSSIPRAKLNSASYKDALPEILE 294
>03_02_0377 -
7898075-7898605,7900782-7901000,7901079-7901142,
7901226-7901282,7901373-7901471,7901744-7901793,
7902378-7902422,7902967-7903062
Length = 386
Score = 26.2 bits (55), Expect = 8.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -1
Query: 207 CEIIRLVGIYEAISCYKSVHFSKPSI 130
C ++ Y A CYK+V +KP I
Sbjct: 62 CVLLAFGYAYPAYECYKTVELNKPEI 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,536,025
Number of Sequences: 37544
Number of extensions: 140499
Number of successful extensions: 236
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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