Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13j05
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC61.05 |||S. pombe specific multicopy membrane protein family...    27   1.6  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    27   2.7  
SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac...    25   6.3  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   6.3  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    25   8.3  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    25   8.3  

>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 361 GIRIPSSSATTLDFSVFVFFIFCKSFIWMASGNIRF 254
           G ++ +S  T +DF VF F   C  F+++    I F
Sbjct: 413 GFQLITSCITFVDFLVFAFLFDCSKFVFLKYQPIPF 448


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 219 KH-RHSIHHCEAKNRIFPEAIQMKDLQKIKNTNTEKSSVVAEDD 347
           KH +H  HH     R F ++ Q  D +K  + +  KSS   +DD
Sbjct: 250 KHDKHEKHHSSLDLRRFFKSHQKTDKEKKPSVSKSKSSANLQDD 293


>SPBC16E9.09c |||COPII vesicle coat component
           Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -2

Query: 243 NGECYAYVLCRNGKIRLIVIIPH*MS-LIYTSFIIINYGYIRFTTINNSGFRICQI 79
           N E   +V   N KIR+ V      + LIY + +  N   +RFTT N    RIC +
Sbjct: 52  NNEANKWVTSNNIKIRVQVDETFANNHLIYKNDLRSNEA-VRFTTTNEGTHRICYL 106


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 307  FFIFCKSFI-WMASGNIRFFASQW*MLC 227
            FF+  + FI W++ GN R  A+ W   C
Sbjct: 1561 FFVDYREFIRWLSRGNSRSHANSWIGYC 1588


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -1

Query: 346 SSSATTLDFSVFVFFIFCKSFIWMASGNIRF 254
           SS+A  L       FI C    W+A   IRF
Sbjct: 427 SSNAKGLTIMTMYLFIICYMAHWLAQHGIRF 457


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = +3

Query: 294 QKIKNTNTEKSSVVAE-DDGILIPPRNISILLQMIGEPPSSGEWIFL-VFFNGQVVMTTK 467
           ++I +  TEK  +      GI +      IL+ ++  P    ++IF  +FF G +++   
Sbjct: 538 EEIVDAETEKKQLDRSLRIGIFVSWIIFFILVIIVPLPMYGSKYIFSKLFFRGWIIVIII 597

Query: 468 WYTESVIEIEYFPV 509
           W   + + I ++P+
Sbjct: 598 WTLIAALYITFYPL 611


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,357,117
Number of Sequences: 5004
Number of extensions: 47227
Number of successful extensions: 107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)