Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13j05
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0160 + 14247463-14247584,14247710-14247923,14250099-142502...    31   0.92 
04_04_1553 - 34363848-34366058,34369087-34370451                       29   2.1  
06_01_0159 + 1193479-1194435,1194509-1194652,1194735-1194821,119...    29   2.8  
01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-70...    29   2.8  
01_01_0089 - 699533-699643,699738-700046,700134-700220,700298-70...    29   2.8  
12_02_0462 - 19373358-19373702,19373836-19373979,19374105-193741...    27   8.5  

>11_04_0160 + 14247463-14247584,14247710-14247923,14250099-14250215,
            14251578-14251670,14251748-14251922,14252981-14253017,
            14253842-14253875,14254212-14254481,14255768-14255872,
            14256295-14256392,14256474-14256616,14257197-14257290,
            14257378-14257487,14258018-14258172,14258252-14258332,
            14258415-14258535,14259358-14259464,14259537-14259668,
            14261105-14261258,14264094-14264211,14264344-14264517,
            14264831-14264882,14265450-14265577,14265670-14265820,
            14265904-14266242
          Length = 1107

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 463  VVITTCPLKKTKNIHSPELGGSPIICRRMLMLRG-GIRIPSSSATTLDF 320
            + I+T P+K   +++ P L  SPI  RR L+     I  P+ S TT  F
Sbjct: 1052 ISISTPPVKNKNSVYEPLLSESPISSRRSLVSSSFDIFQPAQSRTTSSF 1100


>04_04_1553 - 34363848-34366058,34369087-34370451
          Length = 1191

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = -1

Query: 412  ELGGSPIICRRMLM--LRGGIRIPSSSATTLDFSVFVFFIFCKSFIWMASGNIRFFASQW 239
            E  G+P +CR       +  +    SS T   F +F+      +F  +   N+ FFAS W
Sbjct: 1096 EFAGNPALCRSQSQSCYKRAVTTEMSSETRFTFGLFLTVEAGFAFGLLTVWNVLFFASSW 1155


>06_01_0159 +
           1193479-1194435,1194509-1194652,1194735-1194821,
           1194910-1195244,1195600-1195840,1195921-1195995,
           1196072-1196157,1196591-1196663,1196805-1197535,
           1197613-1197784,1197862-1197948,1198255-1198344,
           1198439-1198549
          Length = 1062

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +3

Query: 300 IKNTNTEKSS--VVAEDDGILIPPRNISILLQMIGEPPSSGE 419
           + NT+TE++S  V  + +G  +PP   +++  ++G P  SGE
Sbjct: 117 MNNTHTEQTSEGVEIKIEGSKLPPITENVVAHVVGVPEGSGE 158


>01_01_0090 +
           706340-707296,707370-707513,707596-707682,707771-708105,
           708462-708702,708783-708857,708932-709017,709451-709523,
           709637-709961,710092-711750,711938-713322
          Length = 1788

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +3

Query: 300 IKNTNTEKSS--VVAEDDGILIPPRNISILLQMIGEPPSSGE 419
           + NT+TE++S  V  + +G  +PP   +++  ++G P  SGE
Sbjct: 117 MNNTHTEQTSEGVEIKIEGSKLPPITENVVAHVVGVPEGSGE 158


>01_01_0089 -
           699533-699643,699738-700046,700134-700220,700298-700469,
           700547-701373,701487-701559,701993-702078,702153-702227,
           702308-702548,702905-703239,703328-703414,703497-703640,
           703714-704670
          Length = 1167

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +3

Query: 300 IKNTNTEKSS--VVAEDDGILIPPRNISILLQMIGEPPSSGE 419
           + NT+TE++S  V  + +G  +PP   +++  ++G P  SGE
Sbjct: 117 MNNTHTEQTSEGVEIKIEGSKLPPITENVVAHVVGVPEGSGE 158


>12_02_0462 -
           19373358-19373702,19373836-19373979,19374105-19374155,
           19374352-19374525,19374864-19374903,19375938-19376026
          Length = 280

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 393 IGEPPSSGEWIFLVFFNGQVVMTTKWYTESVIEIEYFPVNL 515
           + + P+SG+W     FNG+  +T  +       + Y PV +
Sbjct: 164 VSKDPNSGDWQVYYGFNGEARLTGYYPRSLFTSLSYKPVTI 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,077,425
Number of Sequences: 37544
Number of extensions: 263970
Number of successful extensions: 553
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)